PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09554g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 457aa    MW: 50918.1 Da    PI: 6.4484
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09554g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-06120141223
                               EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                C+ Cgk Fs+   L  H+rtH
  Niben101Scf09554g00002.1 120 ICKECGKEFSSTQALAGHLRTH 141
                               5********************9 PP
2zf-C2H215.16.6e-05151173123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C++Cgk F +   L  H+++H
  Niben101Scf09554g00002.1 151 HICEKCGKGFGSTRALYGHMKVH 173
                               68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-5432No hitNo description
SMARTSM003550.059931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.133119146IPR007087Zinc finger, C2H2
SMARTSM003550.006119141IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-8120143IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-10120173No hitNo description
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-6121143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.606.9E-4146174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.004151173IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.115151178IPR007087Zinc finger, C2H2
SMARTSM003550.0042151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
PfamPF139121.1E-8380404IPR007087Zinc finger, C2H2
SMARTSM003551.2380402IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEETQEQKHK CRFCNQSCSS GRSLGGHMRI HLDLISAEKK QKIKAEKKMG SEEEEKGDNH  60
FENLSISDQS DRSMSQEKVN NISTNDVDDI DSVGYGLREN PRKSWRGSEL KLGSLKTQII  120
CKECGKEFSS TQALAGHLRT HSKKGTTEES HICEKCGKGF GSTRALYGHM KVHVKRSRDD  180
QESESSKQSL SDFETVCPIR KKRSKIKYKT DANPESSSAI SEVEETEEAA KNLMMLSCGV  240
RDWDEYLSMS KPLKKENAKS LSQAGCSDSG CVDGYEKKCE NEVINNEFSG KLMMLNTEIT  300
RVCYSTTILG LDNDPSEDLA FLNSCSVKNA GVDFQVLNQK TNFVSDMVNS QLECIDDSPV  360
ELGTIGVIRT SPEPIKTKDH KCPICFKIFP SGQSLGGHKS AHYAGFNESK RKETMVKKLE  420
DLADNHRSFD LNNPVNVVDG GEKDVVELNL WWVGGSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757607.10.0PREDICTED: zinc finger protein ZAT1-like
RefseqXP_016446098.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A314KUK40.0A0A314KUK4_NICAT; Uncharacterized protein
STRINGXP_009757607.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.17e-17C2H2-like zinc finger protein