PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09512g02006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 363aa MW: 40043 Da PI: 6.2374

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09512g02006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.5e-31	180	238	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC+++k+ver+++dp+++++tY++eHnh+ Niben101Scf09512g02006.1 180 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSARKQVERNRSDPNMFIVTYTSEHNHP 238 79**********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-31	170	240	IPR003657	WRKY domain
PROSITE profile	PS50811	34.681	174	240	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-27	177	240	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	179	239	IPR003657	WRKY domain
Pfam	PF03106	1.9E-26	181	238	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MEDDWDLHAV VRGCAASSTV ATTTTTTSSA VTTTTTTTFC SFQPRQDGNL FSFQDPFVSR 60 FDNPNNTAFE ELHNLYKPFF PKSQPQQQPP LSPQNIPISP LSVLGGLQDL SPQQTLIKQQ 120 QQQHIHQLNT RVLTQPKQSL SVNGSTNSTT SLSHTQSPRP KRRKNQLKKV CQVPAEGLSS 180 DMWSWRKYGQ KPIKGSPYPR GYYRCSTSKG CSARKQVERN RSDPNMFIVT YTSEHNHPMP 240 THRNSLAGST RQKPVNSEAG TPSDSNKPTS SSPVSSPACH SPATDKQDSS REEKEDIFED 300 DDDEFGSSNM GLDNMEPADD DFFEGLEELV ANATGDCFPD NFPGSVQFPW LTNNATTTAA 360 GGV

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MEDDWDLHAV VRGCAASSTV ATTTTTTSSA VTTTTTTTFC SFQPRQDGNL FSFQDPFVSR  60
FDNPNNTAFE ELHNLYKPFF PKSQPQQQPP LSPQNIPISP LSVLGGLQDL SPQQTLIKQQ  120
QQQHIHQLNT RVLTQPKQSL SVNGSTNSTT SLSHTQSPRP KRRKNQLKKV CQVPAEGLSS  180
DMWSWRKYGQ KPIKGSPYPR GYYRCSTSKG CSARKQVERN RSDPNMFIVT YTSEHNHPMP  240
THRNSLAGST RQKPVNSEAG TPSDSNKPTS SSPVSSPACH SPATDKQDSS REEKEDIFED  300
DDDEFGSSNM GLDNMEPADD DFFEGLEELV ANATGDCFPD NFPGSVQFPW LTNNATTTAA  360
GGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-24	164	241	2	80	Disease resistance protein RRS1
5w3x_D	2e-24	164	241	2	80	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009768958.1	0.0	PREDICTED: WRKY transcription factor 22-like
Refseq	XP_016487160.1	0.0	PREDICTED: WRKY transcription factor 22-like
TrEMBL	A0A1S4BE05	0.0	A0A1S4BE05_TOBAC; WRKY transcription factor 22-like
TrEMBL	A0A1U7VRD3	0.0	A0A1U7VRD3_NICSY; WRKY transcription factor 22-like
STRING	XP_009768958.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2591	24	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	6e-60	WRKY family protein