PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09459g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 399aa    MW: 45012 Da    PI: 7.7523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09459g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19234282355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  Niben101Scf09459g02008.1 234 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYILRG 282
                               8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.55E-31232292No hitNo description
Gene3DG3DSA:3.30.730.104.1E-31233291IPR001471AP2/ERF domain
SMARTSM003801.1E-36233296IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22233291IPR016177DNA-binding domain
PROSITE profilePS5103222.234233290IPR001471AP2/ERF domain
PfamPF008472.8E-12234281IPR001471AP2/ERF domain
PRINTSPR003679.7E-11234245IPR001471AP2/ERF domain
PRINTSPR003679.7E-11256272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MENQSSKSDS YMQKELPTCY KEVAIESLSR YFKNPHILEG LNDEISLTSF PNMKEILVSS  60
SDSTSSTKFS EFFPLNFLQN DQGNNNNNNI IPLNNFLESF HHHNQVSDHQ TCSSPNSLSS  120
NYPTLGLFLK EPSILEISKR AEESLNNKSH NQIHQQQQAA ATTSTTNWLK MNQTITNCST  180
TKGFSDYWLS TTKTQPMKIT RGSTKSSLHY NQGNQNSSSS SSSSLMATSQ GKLFRGVRQR  240
HWGKWVAEIR LPRNRTRVWL GTFDTAEEAA IAYDTAAYIL RGDYAHLNFP HLKNQLKANS  300
INGNTSALLE AKIRAISSQT KKANDHDQAT KEVVLVTDDS RIKNVISQNQ EMENSEKKVK  360
NINQERLLSE NNIDGVQLSR MPSLDMDMIW DALLVSDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21229300168ATERF1
3gcc_A2e-21229300168ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607801.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
RefseqXP_016454529.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A1S3YQN90.0A0A1S3YQN9_TOBAC; ethylene-responsive transcription factor ERF062-like
STRINGXP_009607801.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-57ERF family protein