PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09191g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 255aa    MW: 27127.4 Da    PI: 8.3485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09191g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202574255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +gr++AeIrdps+   + r++lg+f+taeeAaka++ a+++++g
  Niben101Scf09191g00005.1 25 HYRGVRKRP-WGRYAAEIRDPSK---KCRVWLGTFDTAEEAAKAYDTAAREFRG 74
                              6********.**********965...69************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-392588IPR001471AP2/ERF domain
CDDcd000183.84E-312582No hitNo description
SuperFamilySSF541719.15E-222583IPR016177DNA-binding domain
PROSITE profilePS5103223.7622582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-322582IPR001471AP2/ERF domain
PfamPF008471.2E-132574IPR001471AP2/ERF domain
PRINTSPR003676.4E-112637IPR001471AP2/ERF domain
PRINTSPR003676.4E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMKEKLNGG LKGGNVKTNG VKEVHYRGVR KRPWGRYAAE IRDPSKKCRV WLGTFDTAEE  60
AAKAYDTAAR EFRGPKAKSN FPLPSENQCP SNSSGPTESS SGETGVHAPH APSELELTRP  120
LGTVAVGCDH GGCKSEVGLV RNGFPIFHHQ PVMGALTSGS SSPVESSSGE TGVHAPLELD  180
LTRRLGAVGE GGNHVRNGFP IFHQQPTVAV LPNGQPILLF DSNFVPTGVL NRPMPYRFEQ  240
VTVEFNGVSA EAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-222583261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453659.11e-159PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW492e-68ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A1S3YN201e-158A0A1S3YN20_TOBAC; ethylene-responsive transcription factor 4-like
STRINGXP_009769304.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-24erf domain protein 9