PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09109g01017.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 343aa MW: 39969 Da PI: 5.7893

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09109g01017.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.6	7.9e-19	39	121	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 Wt+qe+ Li+a++e++ +l++g+lk+ +Weev++ + ++ gf ++s++qC++k+e+l+kry++++ ++++yf Niben101Scf09109g01017.1 39 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYF 117 *********************************9966667766579***************98766664......359999 PP trihelix 83 dqle 86 d ++ Niben101Scf09109g01017.1 118 DLMD 121 9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.3E-19	38	123	No hit	No description
PROSITE profile	PS50090	6.26	38	99	IPR017877	Myb-like domain
SMART	SM00595	2.8E-5	46	128	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MASSSSSPPP PLLLPPPESI QPQPQISPSP QKKTQPLPWT HQETFNLIQA YQEKWYSLKK 60 GQLKASQWEE VAITVAARCG FDEPSKSATQ CRHKIEKLRK RYRAERLKPY PNSWQYFDLM 120 DRMERGPLPI SAHPVAMVKC QQNLNSILNP NSTAADHQRY YYDNNTDSDD VDALSYMDMR 180 KNKCKSINHI VRGEMGVTGM NVNENVNVVD NRNVNRMVKD RNFDVMRRIR NPMNEKRKGY 240 FGNVAIDDDD EDEDVEEEVD EEEDEENEGS VGGSELAAEI RGFAERFMRM ENKNIEMMKE 300 TERYRMEMEK RRMEMILENQ RNLIDTINRV VGSHKKVKVA QEF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MASSSSSPPP PLLLPPPESI QPQPQISPSP QKKTQPLPWT HQETFNLIQA YQEKWYSLKK  60
GQLKASQWEE VAITVAARCG FDEPSKSATQ CRHKIEKLRK RYRAERLKPY PNSWQYFDLM  120
DRMERGPLPI SAHPVAMVKC QQNLNSILNP NSTAADHQRY YYDNNTDSDD VDALSYMDMR  180
KNKCKSINHI VRGEMGVTGM NVNENVNVVD NRNVNRMVKD RNFDVMRRIR NPMNEKRKGY  240
FGNVAIDDDD EDEDVEEEVD EEEDEENEGS VGGSELAAEI RGFAERFMRM ENKNIEMMKE  300
TERYRMEMEK RRMEMILENQ RNLIDTINRV VGSHKKVKVA QEF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226222.1	0.0	PREDICTED: uncharacterized protein LOC109207705
TrEMBL	A0A314KTX8	0.0	A0A314KTX8_NICAT; Uncharacterized protein
STRING	XP_009792432.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12466	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	8e-30	Trihelix family protein