PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09075g02003.1 | ||||||||
Common Name | HB1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 27377.8 Da PI: 9.2273 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.7e-18 | 99 | 153 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++ +++ ++++eLA++l+L rqV vWFqNrRa+ k Niben101Scf09075g02003.1 99 RKKFRLTKAQSALLEESFKQHTTLNPKQKQELARNLNLRPRQVEVWFQNRRARTK 153 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 99 | 187 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +kk rl+k q++lLEesF+++++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke + Niben101Scf09075g02003.1 99 RKKFRLTKAQSALLEESFKQHTTLNPKQKQELARNLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKKCCETLTEENRRLHKELQ 183 699********************************************************************************** PP HD-ZIP_I/II 86 eLree 90 eL+ + Niben101Scf09075g02003.1 184 ELK-A 187 **9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-19 | 86 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-18 | 92 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.605 | 95 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 97 | 159 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-15 | 99 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.33E-15 | 99 | 156 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.6E-23 | 155 | 198 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.3E-11 | 155 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MADQKSTKIA PVVMAKGPSL GFEPSLTLSL SGDHTYNKQQ AVKNDHQSAD LYRQDSAASS 60 YSNASVKRER DVGSEEATTE VERVSSRVSD EDDDGSNARK KFRLTKAQSA LLEESFKQHT 120 TLNPKQKQEL ARNLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEILKKCCET LTEENRRLHK 180 ELQELKAVKI AQPLYMQRPA ATLTMCPSCE RIGGVGENTS KNPFTLAQKP HFYNSFTNPS 240 AAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 155 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592889.1 | 1e-157 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_016496679.1 | 1e-157 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 2e-87 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | C6FFS4 | 0.0 | C6FFS4_NICBE; Homeodomain leucine-zipper 1 | ||||
STRING | XP_009592889.1 | 1e-157 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-83 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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