PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09057g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 478aa    MW: 53489.2 Da    PI: 7.4797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09057g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.74.1e-22325377259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++WrKYGqK++kgs++p      ts+gC ++k+ver+++dp++++itY+ eHnh+
  Niben101Scf09057g01009.1 325 SDMWSWRKYGQKPIKGSPYPS-----TSKGCLARKQVERNRSDPNMFIITYTAEHNHP 377
                               79****************995.....9******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-22312379IPR003657WRKY domain
PROSITE profilePS5081127.588319379IPR003657WRKY domain
SuperFamilySSF1182908.76E-19322379IPR003657WRKY domain
SMARTSM007742.4E-26324378IPR003657WRKY domain
PfamPF031062.4E-16326377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAEEDWDLHA VVRSCAAANS TTTTTATTTS SSGSATISSC NFQPRVDDSN SFCFQDLYFD  60
PRFTTQNTAT EELHELCKPF FNESPFQKSP LISPQRLLQD LPLQKITERQ QQQQQFNQLN  120
TKVIQPIKRP LSSVNGATLH AQSPRSKRRS QGIKQRRNNM AEEDWDLHAV VRSCAAANST  180
TTTTATTTSS SGSATISSCN FQPRVDDSNS FCFQDLYFDP RFTTQNTATE ELHELCKPFF  240
NESPFQKSPL ISPQRLLQDL PLQKITERQQ QQQQFNQLNT KVIQPIKRPL SSVNGATLHA  300
QSPRSKRRKN QMKKVCQVAA DALSSDMWSW RKYGQKPIKG SPYPSTSKGC LARKQVERNR  360
SDPNMFIITY TAEHNHPMPT HRNSLAGISL HNKKTNSNKT ISSSSVSSPV TNSPAPENQE  420
SSKEEKEDIF EDENDDFFEG LEELESPDAG DSLTENFPGT LQFPWMTNNA ATTAAGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-15309380280Disease resistance protein RRS1
5w3x_D1e-15309380280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252156.11e-178PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1J6I2Z21e-176A0A1J6I2Z2_NICAT; Wrky transcription factor 22
STRINGXP_009758175.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-47WRKY family protein