PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08972g02007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 624aa    MW: 69897 Da    PI: 7.1816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08972g02007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-12434480455
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Niben101Scf08972g02007.1 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITEMQ 480
                               799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.8E-5548236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.475430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-17431493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-13433484No hitNo description
PfamPF000108.2E-10434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17434491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-16436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MGTGNMSWSD EDKATVAAVL GKEAFEYLIF SSVSAECSSM AIGNDQNLQN KLSDLVERPN  60
ATNFSWNYAI FWQNSRSKSG ELVLGWGDGC CREPREGEEC EVKRIFNLRL EDEAQQRMRK  120
RVLQKLHMLF GGTDEDNYAI GLDRVTDTEM FFLASMYFLF PRGEGGPGKC FGSGKHMWLS  180
DALKSPLDYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVR SVPESLELLQ SIKSCFSSFL  240
VRAKPAAGIA VVTEKKDGNN SPFSTSAFSE RPDGTPKIFG HDLNSGTHFR EKLAVRKAEE  300
GPWDIYQNGN RMPFMNGRSG LHAASWAQFS NVKPVKPVEL YRPQTPPAHN LQELVNDGRE  360
EFHLNNFQHQ KPARMQIDFT GATSRPIISP SHTVESEHSD VEASCKKDRV GPIDEKRPRK  420
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITEMQ  480
KKLRDMETER ELRLGSTSRD AMAAEDSPNS EIQIRVPDIN IEAANDEVIV RVSCPLESHP  540
ISRVIQTFKE AQINVVESKL SAGNGTVFHT FVLKSNGSEQ LTKEKLLAAL SSESDSLRQF  600
SPIQDVHLTM QLFKNAQKNV YDRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28428490264Transcription factor MYC2
5gnj_B2e-28428490264Transcription factor MYC2
5gnj_E2e-28428490264Transcription factor MYC2
5gnj_F2e-28428490264Transcription factor MYC2
5gnj_G2e-28428490264Transcription factor MYC2
5gnj_I2e-28428490264Transcription factor MYC2
5gnj_M2e-28428490264Transcription factor MYC2
5gnj_N2e-28428490264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415423KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459177.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_019230031.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1J6JKI30.0A0A1J6JKI3_NICAT; Transcription factor bhlh13
TrEMBLA0A1S3Z4N70.0A0A1S3Z4N7_TOBAC; transcription factor bHLH13-like
STRINGXP_009781532.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]