PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08871g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 315aa    MW: 35509.6 Da    PI: 4.3787
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08871g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1860113356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++  +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV +WFqNrRa++k
  Niben101Scf08871g01002.1  60 KKRRLRVDQVKALEKNFEVDNKLEPDRKVKLAQELGLQPRQVAIWFQNRRARWK 113
                               45578899*********************************************9 PP
2HD-ZIP_I/II106.81.6e-3459132172
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea..Lkrayda 72 
                               ekkrrl  +qvk+LE++Fe ++kLep+rKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy+   Lk++++ 
  Niben101Scf08871g01002.1  59 EKKRRLRVDQVKALEKNFEVDNKLEPDRKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNIceLKSKLNG 132
                               69*************************************************************85226766654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1948117IPR009057Homeodomain-like
PROSITE profilePS5007117.16755115IPR001356Homeobox domain
SMARTSM003893.4E-1758119IPR001356Homeobox domain
CDDcd000862.16E-1660116No hitNo description
PfamPF000461.7E-1560113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-1963122IPR009057Homeodomain-like
PRINTSPR000317.9E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000317.9E-695111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKRVRSSDSL GVPLISMCQN TTDDHHQWNS QVYSRDFQSM LELGLEDEPC VEESGHGSEK  60
KRRLRVDQVK ALEKNFEVDN KLEPDRKVKL AQELGLQPRQ VAIWFQNRRA RWKTKQLERD  120
YNICELKSKL NGGNNESKTD VKEEAIESET DDKYIDQSKP NNITTSLGNC EDDSTELNFE  180
SFNGGNGTIN GSNIFADFKD GSSDSDSSAI LNEENSPNYA AISSSGAFLI SNNGGSNSSS  240
SNSSLNCFQF FDSNAKAILG DGQDKVVYSN QPQFVKMEEH NFFSSEESCS TLFVDEQAPT  300
LQWYCSEDWN NWKDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234037.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1J6L7A70.0A0A1J6L7A7_NICAT; Homeobox-leucine zipper protein athb-6
STRINGXP_009768030.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.14e-43homeobox protein 6