PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08811g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 588aa    MW: 63985.2 Da    PI: 7.5285
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08811g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31246303260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  ++++ ei+Y+g+H+h+k
  Niben101Scf08811g00007.1 246 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQIAEIVYKGSHDHPK 303
                               8****************************************.***************85 PP
2WRKY106.21.7e-33409467159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Niben101Scf08811g00007.1 409 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 467
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-26236304IPR003657WRKY domain
PROSITE profilePS5081122.561240304IPR003657WRKY domain
SuperFamilySSF1182903.66E-24242304IPR003657WRKY domain
SMARTSM007745.1E-33245303IPR003657WRKY domain
PfamPF031062.1E-23246302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37394469IPR003657WRKY domain
SuperFamilySSF1182902.09E-29401469IPR003657WRKY domain
PROSITE profilePS5081138.825404469IPR003657WRKY domain
SMARTSM007743.1E-39409468IPR003657WRKY domain
PfamPF031063.6E-26410467IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MEDSHSKSHS HSQQQNSSSE QLRDGISSVH DGSISSGAAG SNGGAKYKLM TPAKLPISRS  60
TCITIPPGLS PSSFLESPVL LSNIKAEPSP TTGSFSKLQA VQGSGGNAAL LLTRGYSSGN  120
TYSERKSSCF EFKFAGGSSS TSGLVAEHVI STGLNQQQNE PLKEVQDQSH HQLVATSSLA  180
KHEMASSKEL SLSAPINVDD SSKEESLSAP INVDAMSMRG QSNTSMQVSF ADHKDVSSVT  240
AERSSDDGYN WRKYGQKLVK GSEFPRSYYK CTYPNCEVKK IFERSPEGQI AEIVYKGSHD  300
HPKPQLSRRF TPGALMSIQE DKFFVEDKFN TNAQRKIEPV STPVSPQQVD ADGPEGTVSQ  360
MQVTNDDMDE DDPFVKRRKM DGAMDITPVI KPIREPRVVV QTVSEVDILD DGYRWRKYGQ  420
KVVRGNPNPR SYYKCTNAGC PVRKHVERAS HDPKAVITTY EGKHNHDVPA ARSNNHEMAG  480
VTPATGGSRI RAEETYSINL DLGVGIGYGV ENGNNRQLHT VHNQVQVSRS GMMVVQPAAI  540
ASHYGIVNGG MSRFGPIDNH VQGHGFETLP FQPSTQFPQN CGKILLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37246470878Probable WRKY transcription factor 4
2lex_A1e-37246470878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804327.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-153WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1U7YJR70.0A0A1U7YJR7_NICSY; probable WRKY transcription factor 20 isoform X1
STRINGXP_009804327.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-154WRKY family protein