PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08721g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 428aa    MW: 48359.3 Da    PI: 8.1819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08721g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-051032123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+ksF++  +L  H+r+H
  Niben101Scf08721g00007.1 10 HVCKFCNKSFNSGRSLGGHMRSH 32
                              79********************9 PP
2zf-C2H2140.0001587106221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C+ CgksF ++  L  H++
  Niben101Scf08721g00007.1  87 ECKECGKSFQSWKALFGHMK 106
                               5******************7 PP
3zf-C2H211.30.0011336358123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp+C k Fs+   L  H r+H
  Niben101Scf08721g00007.1 336 HECPICFKIFSSGQALGGHKRSH 358
                               79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-4932IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.2E-101032No hitNo description
PfamPF139126.4E-91033IPR007087Zinc finger, C2H2
SMARTSM003550.00361032IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0141032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-1081108No hitNo description
PROSITE profilePS5015710.61686113IPR007087Zinc finger, C2H2
SMARTSM003550.008486108IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-487109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.3E-987110IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034275302IPR007087Zinc finger, C2H2
SuperFamilySSF576674.18E-8275297No hitNo description
PfamPF139122.1E-12275298IPR007087Zinc finger, C2H2
SMARTSM003550.016275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
SuperFamilySSF576674.18E-8331358No hitNo description
PROSITE profilePS501579.203336358IPR007087Zinc finger, C2H2
PfamPF139128.4E-10336359IPR007087Zinc finger, C2H2
SMARTSM003550.22336358IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGEDQEIVKH VCKFCNKSFN SGRSLGGHMR SHMINSTDGN TTRKMLPILD AGAQNANYVL  60
RENPKKTSKF TESSEEDTLL QNQKNKECKE CGKSFQSWKA LFGHMKCHSD RISSMNNSVE  120
QEEVMDSQSD TETAAPNKKK RSSRKMKRYM ATTTSSSLTI AYNASPCISE IEHDQLQEEV  180
AMSLILLSKD IGNWVGQNHV IECSDNNYQP HQNDKDGELV KLKMVKNGKT EQGESSKSNG  240
QKRDKSQVST DDEKKKKIKV IEDFTEDFNS KKIKFECTIC NKSFHSYQAL GGHRASHKNI  300
ENKGVDHTKI IKNCSSESAV NEKIETNSGS KKLKNHECPI CFKIFSSGQA LGGHKRSHLI  360
AEAKRNNNQV VEIVQKPVPE IRNFLDLNLP APVEEENMLD SSSENIGFQQ WWMENSHKHE  420
QLLGLISN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240439.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1J6K5B80.0A0A1J6K5B8_NICAT; Zinc finger protein zat1
STRINGXP_009623743.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-30C2H2-like zinc finger protein