PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08653g06018.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 395aa MW: 44779.6 Da PI: 6.8799

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08653g06018.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.6	3.8e-22	80	139	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Niben101Scf08653g06018.1 80 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 139 7***************99************************************97 PP
2	Wus_type_Homeobox	115.4	2.8e-37	79	141	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Niben101Scf08653g06018.1 79 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 141 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.5E-5	77	144	IPR001356	Homeobox domain
Pfam	PF00046	6.9E-20	80	139	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.14E-12	80	145	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-9	80	139	IPR009057	Homeodomain-like
CDD	cd00086	5.67E-6	81	141	No hit	No description
PROSITE profile	PS50071	11.256	85	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MWMMGYNDGG DFNMQDSFNG RKLRPLMPRV PHLPTANIST NPTCLRSIHG ENFIALNHHQ 60 LAMSEQNKRD FNTQQLVVSS RWNPTPEQLQ TLEELYRRGT RTPSAEQIQH ITAQLRRYGK 120 IEGKNVFYWF QNHKARERQK RRRQLESAGA AAANAGGDDQ SRNNCNPENT ERKESGANRT 180 GFEIEQTKNW PSPTNCSTLA EKTVATTKAA AAGVAECRVA AERWIPFDEG EQRRSLLLAD 240 QRNATWQMMH LSCSPPTTTT PHHHLMNNSI STASISNTIT ATTTPIICSS TTPSTLRTTM 300 EPKQLFKTKD HLNIIIAPFR TDNHKHENME NIFGDEGQEE SQTLELFPLR SSNDNNDDNN 360 FQEKDEVEIS GADDNSNSNF SGSHCQFFEF LPLKN

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MWMMGYNDGG DFNMQDSFNG RKLRPLMPRV PHLPTANIST NPTCLRSIHG ENFIALNHHQ  60
LAMSEQNKRD FNTQQLVVSS RWNPTPEQLQ TLEELYRRGT RTPSAEQIQH ITAQLRRYGK  120
IEGKNVFYWF QNHKARERQK RRRQLESAGA AAANAGGDDQ SRNNCNPENT ERKESGANRT  180
GFEIEQTKNW PSPTNCSTLA EKTVATTKAA AAGVAECRVA AERWIPFDEG EQRRSLLLAD  240
QRNATWQMMH LSCSPPTTTT PHHHLMNNSI STASISNTIT ATTTPIICSS TTPSTLRTTM  300
EPKQLFKTKD HLNIIIAPFR TDNHKHENME NIFGDEGQEE SQTLELFPLR SSNDNNDDNN  360
FQEKDEVEIS GADDNSNSNF SGSHCQFFEF LPLKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804164.1	0.0	PREDICTED: WUSCHEL-related homeobox 1
Refseq	XP_016437977.1	0.0	PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBL	G0ZGT4	0.0	G0ZGT4_NICSY; STENOFOLIA 1
STRING	XP_009804164.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4681	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	2e-63	WUSCHEL related homeobox 1