PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08573g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 226aa MW: 26267.1 Da PI: 9.2704

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08573g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.3e-13	83	132	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah +Er+RR+++ s + Lr++lP + ++K s ++ Le+A++YI++L+ Niben101Scf08573g00005.1 83 AHRDVERQRRQEMASLYVSLRSHLPLEF--LKGKRSASDHLEQAMNYIQHLE 132 8***********************65..9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.214	79	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-12	82	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-9	83	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.06E-8	83	135	No hit	No description
Pfam	PF00010	1.1E-10	83	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-5	85	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDPLSEIFSF HKIQEYDIYH QEIQIPSTPC QLPQQDLVKI GTNSLPRNDT NKKKRSGTLL 60 SSVSTESTSN ETMDQNKLIK IIAHRDVERQ RRQEMASLYV SLRSHLPLEF LKGKRSASDH 120 LEQAMNYIQH LENNINDLEK KRKKLKILAH YSNREDKESI HKYNLEEYVR VNPCQNGVEI 180 LIKKKFGKEG LPLSKVIEEL MKKKLNIVTC VSTTVDETSL HKIQVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	143	KKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016437313.1	1e-152	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S3XC32	1e-151	A0A1S3XC32_TOBAC; transcription factor bHLH118-like
STRING	XP_009597785.1	1e-144	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-32	bHLH family protein