PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08526g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 619aa    MW: 70011.1 Da    PI: 4.5991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08526g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31.1e-51231492128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                               ppGfrFhPtdeelv +yLkkk+ +k++ l ++i+e+d+yk++P+dLp  +k+k+++++w+fFs+rd+ky++g r+nr+tk+gyWk
  Niben101Scf08526g04001.1  23 PPGFRFHPTDEELVLYYLKKKICRKRILL-DAIAETDVYKWDPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRSTKHGYWK 106
                               9*************************999.99**************96559999******************************* PP

                       NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               atgkd+ +++ ++++vg+kktLvfykgrap ge+tdWvmhey++
  Niben101Scf08526g04001.1 107 ATGKDRIITC-NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 149
                               **********.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5819172IPR003441NAC domain
PROSITE profilePS5100555.44422172IPR003441NAC domain
PfamPF023652.6E-2723148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MKMLELIDSD SFACFGSSKN AFPPGFRFHP TDEELVLYYL KKKICRKRIL LDAIAETDVY  60
KWDPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARSNRST KHGYWKATGK DRIITCNSRA  120
VGVKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKMCQNV HDYYALYKVF KKSGPGPKNN  180
EQYGALFREE DWVDDECPSA KASVRPVDDE HPSAKASVRQ DTSAKHVNEA PSVDAGLEEL  240
LNNTANEAVL VEPLCADYDY ALEQLVYEED TESTLLDHSS REVYFPNYSA VIAPSCQQYH  300
VKESFDLTQS GRSQLQLHEA PEVTSAPVSR EQQRHVVEED FLEDYLEMND LLGPEPSIQN  360
FDNPELGVKN FDEPGPSGQN FDKLAGNFED LQFDYLDGLT EFDLYHDTPL LLDDIRTTDV  420
GQITEPYMNN FVNGAVNPVS TTYLSNFQNE MVNHQPMYLN NREQISNQLW THDQTFNIYN  480
PSEANQLIVP PAISGVVYDS NLANHPMGGN QNQIVRQDDG TPSWFSSQLW ALVDSIPTTP  540
AAAAESPLVN GAFKRMSSFS KLRINARNMN VVEGNTVTSS SSGNSKYGVF YFSFLGILCA  600
ILCVLLGTFV KVFGKFISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-472214915140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775198.10.0PREDICTED: uncharacterized protein LOC104225129 isoform X1
TrEMBLA0A1U7W9880.0A0A1U7W988_NICSY; uncharacterized protein LOC104225129 isoform X1
STRINGXP_009775198.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-121NAC domain containing protein 17