PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08473g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 26071.5 Da PI: 8.4816 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 96 | 150 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee Fe++++++ +++++LA+kl++ rqV vWFqNrRa+ k Niben101Scf08473g00002.1 96 RKKLRLTKVQSALLEESFEQHSTLNSNQKQHLARKLNVRPRQVEVWFQNRRARTK 150 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.5e-38 | 96 | 185 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +kk+rl+k q++lLEesFe++++L++++K++lar+L+++prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L ev+ Niben101Scf08473g00002.1 96 RKKLRLTKVQSALLEESFEQHSTLNSNQKQHLARKLNVRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRKLYMEVQ 180 69*********************************************************************************** PP HD-ZIP_I/II 86 eLreel 91 eL+ +l Niben101Scf08473g00002.1 181 ELK-AL 185 **9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.0E-17 | 87 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 89 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.406 | 92 | 152 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-14 | 94 | 156 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.09E-15 | 96 | 153 | No hit | No description |
Pfam | PF00046 | 9.4E-16 | 96 | 150 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 127 | 150 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.9E-9 | 152 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 8.3E-24 | 152 | 195 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGFDDICGTG LALGFGFSSI ANNQRSRKPA ADKGGSLNFE PSLSLSLSKD KSADHLSSST 60 YSNASVKRER DIGCEETEVE RVLSYRVSDD DCSNGRKKLR LTKVQSALLE ESFEQHSTLN 120 SNQKQHLARK LNVRPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCETLTD ENRKLYMEVQ 180 ELKALKLAQP LYMQLPAAAT LTVCPSCERV AGAGENAPTK PHFYGPFTNP SAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 152 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235796.1 | 1e-161 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46603 | 2e-82 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | A0A1J6L0P1 | 1e-159 | A0A1J6L0P1_NICAT; Homeobox-leucine zipper protein hat22 | ||||
STRING | XP_009796334.1 | 1e-157 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 7e-77 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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