PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08374g06004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 187aa MW: 21197.6 Da PI: 10.2001 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.8 | 8.4e-40 | 51 | 129 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEE..EEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgle..qrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+e+C+adls+ak+yhrrhkvCe h+ka+vv+v+gl+ qrfCqqCsrfhel+efDe+krsCrrrLa+hnerrrk++ Niben101Scf08374g06004.1 51 CCQAEKCSADLSDAKQYHRRHKVCECHAKAQVVVVAGLRqrQRFCQQCSRFHELTEFDESKRSCRRRLAGHNERRRKSS 129 6***********************************9752278**********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.9E-31 | 44 | 115 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.188 | 49 | 128 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-35 | 51 | 131 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-29 | 52 | 127 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
METAGHHNIS TSEDDYKKKR GSCNNNITTD NKHIKKGSLN NGGSSTTQRS CCQAEKCSAD 60 LSDAKQYHRR HKVCECHAKA QVVVVAGLRQ RQRFCQQCSR FHELTEFDES KRSCRRRLAG 120 HNERRRKSSL PSAADQSQIA ETGSSRKGTA QLNNKDINNM MCGQVNDRGR IQISIQENST 180 FKNFHLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-34 | 42 | 127 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019252458.1 | 1e-119 | PREDICTED: squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q9S7A9 | 1e-41 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A1J6IX69 | 1e-118 | A0A1J6IX69_NICAT; Squamosa promoter-binding-like protein 4 | ||||
STRING | XP_009626190.1 | 1e-104 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-33 | squamosa promoter binding protein-like 4 |