PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08351g04015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 279aa    MW: 29882.8 Da    PI: 5.1478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08351g04015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09129173554
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Niben101Scf08351g04015.1 129 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 173
                               99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15122183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14126183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-7129173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MANNPSEGPD DFFDQILGFQ AYNGAEQNLA GNDGGAIPPA MMLQLNSGDV SGQFSGVGLG  60
VGLGGGGFHH PTQSGSFPLE LSLEGGKSGF MKMDDVPAGF HGQPMPSMPH PPAIRPRVRA  120
RRGQATDPHS IAERLRRERI AERIRALQEL VPSVNKTDRA VMLDEIVDYV KFLRLQVKVL  180
SMSRLGGAGA VAPLVTDIPI SSVEEESSEG GNNQPAWEKW SSDGTERQVA KLMEENIGSA  240
MQFLQSKALC IMPISLASAI YHSQPPDTSS LIKPETNPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776898.11e-166PREDICTED: transcription factor UNE12-like
RefseqXP_016484656.11e-166PREDICTED: transcription factor UNE12-like
SwissprotO227681e-104UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S4B7011e-165A0A1S4B701_TOBAC; transcription factor UNE12-like
TrEMBLA0A1U7WE071e-165A0A1U7WE07_NICSY; transcription factor UNE12-like
STRINGXP_009776898.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.25e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]