PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08250g02009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 441aa    MW: 49998.9 Da    PI: 7.12
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08250g02009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000187093123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                              + C+ Cgk Fs+   L  H+++ H
  Niben101Scf08250g02009.1 70 HICSECGKQFSSGKALGGHMSSaH 93
                              68******************9988 PP
2zf-C2H2140.00015135154221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                C  Cgk F++k +L  H+r
  Niben101Scf08250g02009.1 135 MCDLCGKNFPSKKSLFGHMR 154
                               5******************8 PP
3zf-C2H212.80.00037369389323
                               ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                               C++Cgk+F+++  L  H ++H
  Niben101Scf08250g02009.1 369 CSICGKTFTSHQALGGHKSSH 389
                               **************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-96892No hitNo description
SMARTSM003550.0457093IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1387098IPR007087Zinc finger, C2H2
PfamPF139126.8E-107093IPR007087Zinc finger, C2H2
PROSITE patternPS0002807293IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-9129156No hitNo description
Gene3DG3DSA:3.30.160.603.1E-4132156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0044134156IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45134161IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
PfamPF139127.7E-7136158IPR007087Zinc finger, C2H2
SMARTSM003550.33367389IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159367394IPR007087Zinc finger, C2H2
PROSITE patternPS000280369389IPR007087Zinc finger, C2H2
PfamPF139124.6E-8369390IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEADNQEENH ELKRSLQEIN RSCEKAVFSG DNSSLKVKIK MPKLEEVVEK EEEKEINGGQ  60
KEEILKKKDH ICSECGKQFS SGKALGGHMS SAHVQANNRE ESWKNKQLKV NNYGQYSKRS  120
RILVEEEEEG VKKIMCDLCG KNFPSKKSLF GHMRCHPDRD WRGMKPPNNK DNFKNKGVLV  180
FPANNSLDYD DDDDNDDYFL NTQEYKELHE IESASNINVA PAFPKADLKD CLKSWAVKDK  240
RGRSAKLSSS ISTSDDKELH DAVHQLIRLV NGVNNINTPK NRHTKTDELE VMCSNSVTPD  300
LPLKDKAKGK RKVDDIEDDY CSGIESKDCF VMANKKRSRP VQKEQQQQTQ YNSTSTQQIK  360
NVTPGKKMCS ICGKTFTSHQ ALGGHKSSHN KFKMTIENTI DQETKIKSAA QDDGSEINIG  420
NASKVLDFDL NELPDVDDCY R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246375.10.0PREDICTED: uncharacterized protein LOC109226025
TrEMBLA0A1S4DNJ40.0A0A1S4DNJ4_TOBAC; uncharacterized protein LOC107831697
STRINGXP_009591959.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-15C2H2 family protein