PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08149g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 482aa    MW: 52758.5 Da    PI: 7.5998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08149g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-0893117126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ykt+lC+ f++ G C+y  +C+FaHg
  Niben101Scf08149g01008.1  93 YKTKLCCKFRA-GVCPYITNCNFAHG 117
                               9**********.*************8 PP
2zf-CCCH34.72.9e-11229254126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C+ +  tG+C++G +C+FaHg
  Niben101Scf08149g01008.1 229 WKTRICNKWETTGYCPFGCKCHFAHG 254
                               8************************9 PP
3zf-CCCH18.24.6e-06307327626
                               -SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                               C+ f+    C+yGd+C+F H+
  Niben101Scf08149g01008.1 307 CKKFYTEEGCPYGDSCTFLHD 327
                               99999999************7 PP
4zf-CCCH43.74.4e-14361386126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C+ +  tG+C++G++C+FaHg
  Niben101Scf08149g01008.1 361 WKTRICNKWETTGYCPFGSKCHFAHG 386
                               8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-890123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-1590125IPR000571Zinc finger, CCCH-type
SMARTSM003560.004892118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.81292119IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-593117IPR000571Zinc finger, CCCH-type
SMARTSM003562169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615169197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6170197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-7171197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8225255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-13225255IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831228256IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8229254IPR000571Zinc finger, CCCH-type
SMARTSM003560.85301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328301329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6302329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-8303329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-17357391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-10357391IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9360387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422360388IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-11361386IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDFMGEAGFA VGNMIQNSTA SSGGFGSWGP NFSDQAVWAT EDDYRDWNSN ETPSNSQNRS  60
GSEPPNKKSR NVQGLDPRDI VTSSSKAIGK MFYKTKLCCK FRAGVCPYIT NCNFAHGIEE  120
LRKPPPNWQD IVAAHESERG GGVLAVEPRE EHQIPILTSP DLRGESQRSA KGRHCKKFYT  180
EEGCAYGDSC TFLHDEQSRA RESVAISVTP TVGGFGNNAT GTTLKPSNWK TRICNKWETT  240
GYCPFGCKCH FAHGVAVDKF IKVPLSSTAE SXGGVLAVEP REEHQIPILT SPDLRGESQR  300
SAKGRHCKKF YTEEGCPYGD SCTFLHDEQS RARESVAISV TPTVGGFGNN ATGTTLKPSN  360
WKTRICNKWE TTGYCPFGSK CHFAHGVAEL NRFGGGPVES EGKDSLSVPP DLNQGGSSFK  420
TTESTVPSTI SALHTDVYHL GQGVQVQRPS SIVERPGQRL FKKWKGPDKI SKIYGDWIDD  480
IE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767653.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
RefseqXP_016484512.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ84UQ32e-86C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1S4B6N80.0A0A1S4B6N8_TOBAC; zinc finger CCCH domain-containing protein 12-like
TrEMBLA0A1U7VMQ80.0A0A1U7VMQ8_NICSY; zinc finger CCCH domain-containing protein 12-like
STRINGXP_009767653.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.17e-88C3H family protein