PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07798g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 653aa MW: 73345.7 Da PI: 10.6582

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07798g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.8	7.7e-15	43	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpy 81 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ ++++pk qCk++++ ++k+yk +k ++ + s++p+ Niben101Scf07798g01002.1 43 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIASG--QGPSKWPF 125 7***********************************856666666644449****************98..56668* PP trihelix 82 fdqle 86 fd+l+ Niben101Scf07798g01002.1 126 FDKLD 130 ***98 PP
2	trihelix	46.8	7.7e-15	347	434	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpy 81 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ ++++pk qCk++++ ++k+yk +k ++ + s++p+ Niben101Scf07798g01002.1 347 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIASG--QGPSKWPF 429 7***********************************856666666644449****************98..56668* PP trihelix 82 fdqle 86 fd+l+ Niben101Scf07798g01002.1 430 FDKLD 434 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-25	41	132	No hit	No description
SMART	SM00595	0.11	51	137	IPR006578	MADF domain
Pfam	PF13837	2.5E-25	345	436	No hit	No description
SMART	SM00595	0.11	355	441	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MSKITFKPLL LSKSVYTNQN TQPQPLRTSG GSGGGGGGGR EDCWSEGATG VLIDAWGERY 60 LELSRGNLKQ KHWKDVADIV SSREDYRKTP KTDIQCKNRI DTVKKKYKLE KSKIASGQGP 120 SKWPFFDKLD QLTGPTAKIN PTVAAIGAGP SNLYSSNQRL QVPMGIPMGV RSLPHLRPHQ 180 QLQSQQKQKQ PFRKRPHVDS DTSESESEPE LSPDSTDSFP PGTFQRKKPR IQRELMNSRA 240 MRQGTRGGSG EASGKGKNWG NSVRELTRAI LKFGEAYEQA ESAKIQQMVE MEKQRMKFAK 300 ELELQRMQFF MNTQLELSQL KNHRRQPQPL RTSGGSGGGG GGGREDCWSE GATGVLIDAW 360 GERYLELSRG NLKQKHWKDV ADIVSSREDY RKTPKTDIQC KNRIDTVKKK YKLEKSKIAS 420 GQGPSKWPFF DKLDQLTGPT AKINPTVAAI GAGPSNLYSS NQRLQVPMGI PMGVRSLPHL 480 RPHQQLQSQQ KQKQPFRKRP HVDSDTSESE SEPELSPDST DSFPPGTFQR KKPRIQRELM 540 NSRAMRQGTR GGSGEASGKG KNWGNSVREL TRAILKFGEA YEQAESAKIQ QMVEMEKQRM 600 KFAKELELQR MQFFMNTQLE LSQLKNHRRV GNSNHRGNNQ TNATANHNNS DSS

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MSKITFKPLL LSKSVYTNQN TQPQPLRTSG GSGGGGGGGR EDCWSEGATG VLIDAWGERY  60
LELSRGNLKQ KHWKDVADIV SSREDYRKTP KTDIQCKNRI DTVKKKYKLE KSKIASGQGP  120
SKWPFFDKLD QLTGPTAKIN PTVAAIGAGP SNLYSSNQRL QVPMGIPMGV RSLPHLRPHQ  180
QLQSQQKQKQ PFRKRPHVDS DTSESESEPE LSPDSTDSFP PGTFQRKKPR IQRELMNSRA  240
MRQGTRGGSG EASGKGKNWG NSVRELTRAI LKFGEAYEQA ESAKIQQMVE MEKQRMKFAK  300
ELELQRMQFF MNTQLELSQL KNHRRQPQPL RTSGGSGGGG GGGREDCWSE GATGVLIDAW  360
GERYLELSRG NLKQKHWKDV ADIVSSREDY RKTPKTDIQC KNRIDTVKKK YKLEKSKIAS  420
GQGPSKWPFF DKLDQLTGPT AKINPTVAAI GAGPSNLYSS NQRLQVPMGI PMGVRSLPHL  480
RPHQQLQSQQ KQKQPFRKRP HVDSDTSESE SEPELSPDST DSFPPGTFQR KKPRIQRELM  540
NSRAMRQGTR GGSGEASGKG KNWGNSVREL TRAILKFGEA YEQAESAKIQ QMVEMEKQRM  600
KFAKELELQR MQFFMNTQLE LSQLKNHRRV GNSNHRGNNQ TNATANHNNS DSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227077.1	0.0	PREDICTED: trihelix transcription factor ASIL2
Swissprot	Q9LJG8	9e-96	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A1J6J9B1	0.0	A0A1J6J9B1_NICAT; Trihelix transcription factor asil2
STRING	XP_009600232.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10332	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-56	sequence-specific DNA binding transcription factors