PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07746g00007.1
Common NameNbWRKY10
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 719aa    MW: 77560.8 Da    PI: 5.9542
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07746g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.7e-28254306255
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege 55 
                               dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g 
  Niben101Scf07746g00007.1 254 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGL 306
                               8****************************************.**********96 PP
2WRKY98.83.6e-31400457260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  Niben101Scf07746g00007.1 400 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 457
                               8****************************************.***************85 PP
3WRKY56.17.3e-185565932259
                               EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               rsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Niben101Scf07746g00007.1 556 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 593
                               9************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-22244305IPR003657WRKY domain
PROSITE profilePS5081119.91248313IPR003657WRKY domain
SuperFamilySSF1182905.36E-21250306IPR003657WRKY domain
SMARTSM007746.0E-28253310IPR003657WRKY domain
PfamPF031061.8E-20254305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-26390458IPR003657WRKY domain
PROSITE profilePS5081125.511394595IPR003657WRKY domain
SuperFamilySSF1182903.01E-24396458IPR003657WRKY domain
SMARTSM007743.4E-33399457IPR003657WRKY domain
PfamPF031061.2E-23400456IPR003657WRKY domain
SuperFamilySSF1182902.62E-15543595IPR003657WRKY domain
SMARTSM007741.8E-15551594IPR003657WRKY domain
PfamPF031064.3E-13556593IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-17556595IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MEDSQSQSQS HYSQQYSHSS PLPSINESSE QQLKISSCDA SAVGSNSSRG AKYKLMSPAK  60
LPISRSACIT IPPGLSPSSF LESPVLLSNI KAEPSPTTGS FSKFQLMQGS SGSTAFSFMR  120
SCSSGNAYGG MTSEFEFKFA VGSSSTSGSL AKEAATFAGL NQQQCEPLNH IQDRCLSQSF  180
APSALVKSEM PNSKEVNLPA PVSLDASSIS TAAPDAAAID NEEIGQRGHS NPSLQGSNAD  240
NRDVSSITAE RSSDDGYNWR KYGQKLVKGS EFPRSYYKCT YPNCEVKKIF ERSPEGQITE  300
IVYKGLNQQQ CEPLNHIQDR CLSQSFAPSA LVKSEMPNSK EVNLPAPVSL DASSISTAAP  360
DAAAIDNEEI GQRGHSNPSL QGSNADNRDV SSITAERSSD DGYNWRKYGQ KLVKGSEFPR  420
SYYKCTYPNC EVKKIFERSP EGQITEIVYK GSHDHPKPQP SRRFTPGALT SIQEDRSEKE  480
ASFTGQEDKF NTNAYTSNIE PSSTTVSPRL ADDDGLEGTV KMDGGMDITP VVKPIREPRV  540
VVQTVSEVDI LDDGYRSYYK CTNAGCPVRK HVERASHDPK AVITTYEGKH NHDVPTARNN  600
SHEMAGSVPV TGSSRVRAEE NGSISLDLGV GIGYGMENRS NGQLPTLPAE NVRNQVQVSS  660
SSMMVVQPAA VAACYGIVNG GMSRFGPIDN PIQGTGFESL PLQPSTQCPQ NYGRIILGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-22254595877Probable WRKY transcription factor 4
2lex_A8e-22254595877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232507.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
RefseqXP_019232508.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
TrEMBLA0A0P0UVU30.0A0A0P0UVU3_NICBE; Transcription factor
STRINGXP_009591627.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.12e-92WRKY family protein
Publications ? help Back to Top
  1. Adachi H, et al.
    WRKY Transcription Factors Phosphorylated by MAPK Regulate a Plant Immune NADPH Oxidase in Nicotiana benthamiana.
    Plant Cell, 2015. 27(9): p. 2645-63
    [PMID:26373453]