PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07614g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 457aa    MW: 50182.3 Da    PI: 6.5885
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07614g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.51.6e-0987135351
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                               e kr +r   NReA r++R++Kka+ + Le++v  L a N++L k+l+ 
  Niben101Scf07614g00005.1  87 EGKRKKRPLGNREAVRKYREKKKARAASLEDEVVRLRAINQQLMKRLQG 135
                               569*****************************************99975 PP
2bZIP_129.51.6e-09275323351
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                               e kr +r   NReA r++R++Kka+ + Le++v  L a N++L k+l+ 
  Niben101Scf07614g00005.1 275 EGKRKKRPLGNREAVRKYREKKKARAASLEDEVVRLRAINQQLMKRLQG 323
                               569*****************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-1382153No hitNo description
SMARTSM003383.7E-1084152IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.34787134IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.72E-789134No hitNo description
PfamPF077169.6E-1389135IPR004827Basic-leucine zipper domain
CDDcd146861.98E-1090144No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-13270341No hitNo description
SMARTSM003383.7E-10272340IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.347275322IPR004827Basic-leucine zipper domain
PfamPF077169.6E-13277323IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.72E-7277322No hitNo description
CDDcd146861.98E-10278332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDDGELEFSN QEMLSSSNFG EFPDSGSMDS FFNEILKDTH ACTHTHTCNP PGPDNTHTHT  60
CYHVHTKIVP PLSEDKTASD DTAESAEGKR KKRPLGNREA VRKYREKKKA RAASLEDEVV  120
RLRAINQQLM KRLQGQAVLE AEIARLKCLL VDIRGRIEGE IGSFPYQKPM KSGNVYQNLV  180
NPNLPGAYVM NPCNLQCDDR VYCLHPGSEG KNLDDTALDG QGFDNCEFET LQCLGNQTSE  240
LKEGSGCALG NVAPTGNPSG GSKRKASDDT AESAEGKRKK RPLGNREAVR KYREKKKARA  300
ASLEDEVVRL RAINQQLMKR LQGQAVLEAE IARLKCLLVD IRGRIEGEIG SFPYQKPMKS  360
GNVYQNLVNP NLPGAYVMNP CNLQCDDRVY CLHPGSEGKN LDDTALDGQG FDNCEFETLQ  420
CLGNQTSELK EGSGCALGNV APTGNPSGGS KRKGELD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262280KRKASDDTAESAEGKRKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797256.10.0PREDICTED: uncharacterized protein LOC104243716
RefseqXP_009797257.10.0PREDICTED: uncharacterized protein LOC104243716
RefseqXP_009797258.10.0PREDICTED: uncharacterized protein LOC104243716
RefseqXP_009797259.10.0PREDICTED: uncharacterized protein LOC104243716
RefseqXP_009797260.10.0PREDICTED: uncharacterized protein LOC104243716
RefseqXP_016502370.10.0PREDICTED: basic leucine zipper 23-like
RefseqXP_016502371.10.0PREDICTED: basic leucine zipper 23-like
RefseqXP_016502372.10.0PREDICTED: basic leucine zipper 23-like
RefseqXP_016502373.10.0PREDICTED: basic leucine zipper 23-like
RefseqXP_016502374.10.0PREDICTED: basic leucine zipper 23-like
SwissprotQ8GTS21e-104BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A1S4CMT90.0A0A1S4CMT9_TOBAC; basic leucine zipper 23-like
TrEMBLA0A1U7YEN70.0A0A1U7YEN7_NICSY; uncharacterized protein LOC104243716
STRINGXP_009797256.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29892452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.15e-93bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]