PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07498g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family RAV
Protein Properties Length: 278aa    MW: 32577.9 Da    PI: 9.1655
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07498g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.2e-084080147
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                              s++kGV     +g W A+I+       ++r++lg+f ++ eAa a++
  Niben101Scf07498g01011.1 40 SRFKGVV-GQHNGHWGAQIYTN-----QQRIWLGTFKSETEAAMAYD 80
                              6899996.4448******8883.....5**********99******9 PP
2B397.77.2e-31142229186
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               f+k+ltpsdv+k++r+v+pkk+a+++  ++++  +++l+++d+s r+W+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF 
  Niben101Scf07498g01011.1 142 FQKELTPSDVGKLNRVVIPKKYASKYfpQIQEVPDVELVFYDTSRRQWKFRYCYWKSSQSFVFTKGWNRFVKDKGLRANDTIVFN 226
                               99**************************88888999************************************************9 PP

                               E-S CS
                        B3  84 ldg 86 
                               l +
  Niben101Scf07498g01011.1 227 LCE 229
                               865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-104087IPR016177DNA-binding domain
CDDcd000181.75E-144080No hitNo description
SMARTSM003804.0E-84193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-114181IPR001471AP2/ERF domain
PROSITE profilePS5103212.94541105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.4E-34137229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-29140230IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-27141227No hitNo description
PROSITE profilePS5086314.17142249IPR003340B3 DNA binding domain
SMARTSM010191.1E-23142236IPR003340B3 DNA binding domain
PfamPF023625.9E-27142229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MISSTTTNLT GDCDSSSTNN LQSKKHKRNT YTRKACISGS RFKGVVGQHN GHWGAQIYTN  60
QQRIWLGTFK SETEAAMAYD IQEPNFQKQF STEDILRMIK EGSYPSKFDD YLKEKYEECH  120
PFHTLQVVEL KAKEGFSYKQ LFQKELTPSD VGKLNRVVIP KKYASKYFPQ IQEVPDVELV  180
FYDTSRRQWK FRYCYWKSSQ SFVFTKGWNR FVKDKGLRAN DTIVFNLCEY KSGPKEISTD  240
FVIDVLKGVE VLPEPKVDIE ERMKIQSTDH HAIYWHQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-2814122613101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771974.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_016492322.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-74RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S4BTX10.0A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U7WBE00.0A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120
STRINGXP_009771974.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.14e-77RAV family protein