PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07493g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WOX | ||||||||
Protein Properties | Length: 219aa MW: 24906.3 Da PI: 9.1243 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.3 | 4.8e-17 | 86 | 139 | 9 | 57 |
HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 9 keqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++q+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Niben101Scf07493g01001.1 86 SSQIGILEMLYRGgMRTPNAQQIEQITVQLakygKIEGKNVFYWFQNHKARERQ 139 68**********99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 99.4 | 2.7e-32 | 86 | 141 | 10 | 65 |
Wus_type_Homeobox 10 peQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++Qi iLe+ly+ G+rtPn+++i++it +L++yGkie+kNVfyWFQN+kaRerqkq Niben101Scf07493g01001.1 86 SSQIGILEMLYRGGMRTPNAQQIEQITVQLAKYGKIEGKNVFYWFQNHKARERQKQ 141 57****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0039 | 81 | 144 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-9 | 85 | 145 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.5E-15 | 86 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-6 | 86 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.313 | 88 | 140 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MYMGSSSGSL SMKVHEFTRG LMLEHDSAAP SLTLGCKRLR PLAPKLSSCT NDPTIVTPPF 60 DLKSFIRPES STSPGKTSFN DDKKDSSQIG ILEMLYRGGM RTPNAQQIEQ ITVQLAKYGK 120 IEGKNVFYWF QNHKARERQK QKRNSLGLSP SPRTPPAIVT SPLSFDTRGE VVREEDSPYK 180 RKCIGWTYEY LEEEEKRNCR EDNGDRTLEL FPLHPEGMR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776871.1 | 1e-146 | PREDICTED: WUSCHEL-related homeobox 4 | ||||
Refseq | XP_016488708.1 | 1e-146 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 2e-60 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A1S4BIK0 | 1e-144 | A0A1S4BIK0_TOBAC; WUSCHEL-related homeobox 4-like | ||||
TrEMBL | A0A1U7WHY0 | 1e-144 | A0A1U7WHY0_NICSY; WUSCHEL-related homeobox 4 | ||||
STRING | XP_009776871.1 | 1e-145 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 9e-62 | WUSCHEL related homeobox 4 |