PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07465g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 822aa MW: 90754.1 Da PI: 5.6768 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.2 | 8.8e-25 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+ Niben101Scf07465g02002.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDS 229 99*********************999*****9555554.49******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F ++++ +l+++v+r+ Niben101Scf07465g02002.1 230 VLFI--RDEKSQLMLGVRRA 247 ****..4567778***9997 PP | |||||||
2 | Auxin_resp | 78 | 2.4e-26 | 272 | 348 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGm + + r++Gt+vg+sdldp+rWp+SkWr+L+ Niben101Scf07465g02002.1 272 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMSPVV-------PFSRYMGTIVGISDLDPLRWPGSKWRCLQ 348 79*********************************9999****97655.......5579************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-47 | 133 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-42 | 139 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.30E-23 | 145 | 246 | No hit | No description |
Pfam | PF02362 | 2.4E-22 | 146 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.267 | 146 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-25 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-21 | 272 | 348 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.388 | 719 | 809 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.89E-7 | 733 | 789 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 822 aa Download sequence Send to blast |
MGSVEEKHKP GSLVSGAHTL LEEMKLLKEM QDHSGGRKLI NSELWHACAG PLVTLPQVGS 60 LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LASQLLCQVH NVTLHADKET DEIYAQMSLQ 120 PVNAEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ 180 PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL 240 MLGVRRANRQ QNSLPSSVLS ADSMHIGVLA AAAHAAANRS TFTIFYNPRA CPSEFVIPLA 300 KYRKSVYGTQ LSVGMSPVVP FSRYMGTIVG ISDLDPLRWP GSKWRCLQAE WDEPGCGDKQ 360 SRVSPWEVET PESLFIFPSL TAGLKRPYQS SFLGGQTEWD SLMHRPFMRV PENVYGELQS 420 SSISNLWSEQ LMKMLARPPG VTGLQCGVPT VQDIKVALPQ ESRNLIHAAG NQKPELSTVE 480 DTSVQSERNP QVILNQPCVV NSISSQQATL QPKSQPPEKV GSDTVGISSE QAKETSVSVD 540 RLDQCQSLGQ CNDEKVTIKP ASPHILPTDA TASHQNSLSP LQSSPWRQIE AASTNNILQC 600 SNNNEWNLPF QSTAGLLRSP VSNSTLTKHE HSFMLPDSVI GPGLAPIGQD LWDHQLNDVK 660 CFSQTNLQVP LLTQDITNMQ FLPDSYGFKD LSEESHNQSD IYSCLNFDSN SGSTVIDNSV 720 TSTIQKAGSV GRSIDVSSFK TYDELRSEIE RMFGLEGLLN DTRGSGWKLV YVDYENDVLL 780 VGDDPWEILS PTEVQQMGEE GMQLLNSAGL QGINGSTSEF PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 373 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016465083.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Refseq | XP_016465084.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1S3ZLE9 | 0.0 | A0A1S3ZLE9_TOBAC; Auxin response factor | ||||
STRING | XP_009778804.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |