PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07223g01009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 195aa MW: 22543.4 Da PI: 9.8371 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.1 | 2.3e-06 | 99 | 122 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Niben101Scf07223g01009.1 99 KSILCEFFKA-GQCAKGFKCKFSHD 122 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.96E-6 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 97 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MPPKQQSKVD LAKKQKIIED KTFGLKNKKK SKNTVNPSNN LSSLKLILKK LIPRSQLYPF 60 CMLLCCKKKD EEKTKEEEMN ELFKGAISQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS 120 HDLNVQRKGE KIDIYSDNMR TMEDWDQEAL EKVVASKSQE YNKKKPTDIV CKYFLEAVEK 180 KQYTCKINIF NSFDP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238516.1 | 5e-77 | PREDICTED: zinc finger CCCH domain-containing protein 11-like | ||||
Swissprot | Q9SK74 | 7e-72 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | S8E8E5 | 4e-77 | S8E8E5_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | VIT_13s0019g03490.t01 | 9e-73 | (Vitis vinifera) | ||||
STRING | XP_002525195.1 | 1e-72 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5680 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-70 | C3H family protein |