PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07109g05015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 393aa MW: 43819.7 Da PI: 6.1338

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07109g05015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.2	3.6e-08	120	166	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r N+eA r++R++Kka+ + Le++v L a N++L k+l+ Niben101Scf07109g05015.1 120 KGKKRPVGNKEAVRKYREKKKARAASLEDEVIRLRAINQQLFKRLQG 166 66788899**********************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.2E-13	111	184	No hit	No description
SMART	SM00338	1.3E-7	115	183	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.4E-13	117	165	IPR004827	Basic-leucine zipper domain
CDD	cd14686	9.06E-10	122	175	No hit	No description
SuperFamily	SSF57959	5.56E-6	122	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MRYGICEEGL LIASALLQIV TLLVTTFGIA MMADGELEFS NQEMLSSSNF GEFSSSMDSF 60 FNEILKDTHA CTHAHTCNPP GPDNSHTHTC YHVHTKFMPP SEEDEDKNPS DDTAESSEKK 120 GKKRPVGNKE AVRKYREKKK ARAASLEDEV IRLRAINQQL FKRLQGQAVL EAEVARLKCL 180 LVDIRGRIEG EIGSFPYQKP MKSGNVYQNV VNPNIPGSYV LNSCNLQCDD QVYCLHPGAE 240 VKSSDGTVLN GQGFNNCEFE TLQCLGNQTS GMEEVSCPMD NGTPTPTANT SGRSKRTGES 300 MSFPLKXLVL WIMAHLLLLP TLLVEAREKE AHAHQQQADE LCRRSIFCSW EQVRFVMCSL 360 LGFLPSLSTL LSSIIISIRL LSWWPSSYLS TFM

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MRYGICEEGL LIASALLQIV TLLVTTFGIA MMADGELEFS NQEMLSSSNF GEFSSSMDSF  60
FNEILKDTHA CTHAHTCNPP GPDNSHTHTC YHVHTKFMPP SEEDEDKNPS DDTAESSEKK  120
GKKRPVGNKE AVRKYREKKK ARAASLEDEV IRLRAINQQL FKRLQGQAVL EAEVARLKCL  180
LVDIRGRIEG EIGSFPYQKP MKSGNVYQNV VNPNIPGSYV LNSCNLQCDD QVYCLHPGAE  240
VKSSDGTVLN GQGFNNCEFE TLQCLGNQTS GMEEVSCPMD NGTPTPTANT SGRSKRTGES  300
MSFPLKXLVL WIMAHLLLLP TLLVEAREKE AHAHQQQADE LCRRSIFCSW EQVRFVMCSL  360
LGFLPSLSTL LSSIIISIRL LSWWPSSYLS TFM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791619.1	0.0	PREDICTED: uncharacterized protein LOC104238836
Refseq	XP_009791625.1	0.0	PREDICTED: uncharacterized protein LOC104238836
Refseq	XP_016513116.1	0.0	PREDICTED: basic leucine zipper 23-like
Refseq	XP_016513124.1	0.0	PREDICTED: basic leucine zipper 23-like
Swissprot	Q8GTS2	1e-104	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A1S4DI90	0.0	A0A1S4DI90_TOBAC; basic leucine zipper 23-like
TrEMBL	A0A1U7XYL6	0.0	A0A1U7XYL6_NICSY; uncharacterized protein LOC104238836
STRING	XP_009791619.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2989	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-87	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]