PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07000g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 355aa    MW: 39895.2 Da    PI: 7.6637
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07000g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-06326226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                              k++lC+ f+  G C  G+ C F+H+
  Niben101Scf07000g01004.1  3 KRVLCK-FFVHGACLKGEYCEFSHD 26
                              99****.7777*************5 PP
2zf-CCCH22.52e-073454526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G C yG+rC++ H+
  Niben101Scf07000g01004.1 34 VCTYYQK-GLCAYGSRCRYEHV 54
                              5******.***********997 PP
3zf-CCCH21.93.1e-07139159526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+  a+ G C++G++C+++Hg
  Niben101Scf07000g01004.1 139 ICS-LAAAGNCPRGEKCPYIHG 159
                               677.8999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.544128IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1452956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-43453IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.253134161IPR000571Zinc finger, CCCH-type
SMARTSM003560.08136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4139159IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4140159IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.26E-12195267No hitNo description
Gene3DG3DSA:3.30.40.101.9E-9196262IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.85E-4202262No hitNo description
PfamPF000973.0E-6203260IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.1E-6203260IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.15203261IPR001841Zinc finger, RING-type
PROSITE patternPS005180227236IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.07290318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488290319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSKRVLCKFF VHGACLKGEY CEFSHDWKDP PNNVCTYYQK GLCAYGSRCR YEHVKVSQQH  60
SPPSSSAPAQ YLHSDPSPTT LSPGMLADGA GLSAEYLTSG RPSYPPNQAA WSENSEHHHV  120
EEIANFVELK RLYPANQSIC SLAAAGNCPR GEKCPYIHGD LCPLCAKHCL HPFRPQESEE  180
HMKTCEKRQK HLDLLKHSQE IECCVCLERV LAKTTAAERK FGILSECDHP FCISCIRNWR  240
SGSPSSGIDI NSTFRTCPVC RKLSYFVIPS VIWYSTKEEK QDILDSYKAK LRSIDCKHFD  300
FGNGTCPFGA SCFYKHQYRD GHLEEVVVRH LGSEDGSTVV AKNISANSPG DMRWS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779785.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotE0X9N41e-154C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1U7WZZ10.0A0A1U7WZZ1_NICSY; E3 ubiquitin-protein ligase makorin-like isoform X1
STRINGXP_009779785.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-148C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]