PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06987g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 111aa MW: 12599.7 Da PI: 9.7817 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.7 | 4.6e-12 | 14 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.............TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.............kgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++++ G g+W++ + g + R++++c++r+ +yl Niben101Scf06987g00001.1 14 KGAWTAEEDMLLTNYIQLNGEGNWRSLPINAGntsfsiysviiieLLRCGESCRLRLMNYL 74 79*********************************************************97 PP | |||||||
2 | Myb_DNA-binding | 26 | 2.1e-08 | 80 | 110 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 r +++ eEd+l+++++ +lGg+ W++Ia +++ Niben101Scf06987g00001.1 80 RRNFSREEDDLIIRLHSLLGGR-WSLIAGRLQ 110 679*******************.*****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-16 | 5 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.258 | 9 | 74 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.2E-7 | 13 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 14 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.05E-18 | 15 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.89E-6 | 16 | 74 | No hit | No description |
PROSITE profile | PS51294 | 17.352 | 75 | 111 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-13 | 78 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3 | 79 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-6 | 80 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MGRAPCCSKV GMRKGAWTAE EDMLLTNYIQ LNGEGNWRSL PINAGNTSFS IYSVIIIELL 60 RCGESCRLRL MNYLRPGIKR RNFSREEDDL IIRLHSLLGG RWSLIAGRLQ G |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802421.1 | 1e-57 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9S9K9 | 2e-41 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A1U7YKB0 | 3e-56 | A0A1U7YKB0_NICSY; transcription repressor MYB6-like | ||||
STRING | XP_009802421.1 | 5e-57 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15484 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 8e-44 | myb domain protein 3 |