PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06879g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 733aa MW: 80919.1 Da PI: 8.4146

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06879g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	441	478	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Niben101Scf06879g00001.1 441 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 478 554459******************************88 PP
2	BELL	119.7	1.3e-38	302	373	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+s+l+eV++rY+qy++q+q++++sFe++ag+gsak+Yt+lAl++iS++FrcLkdai++qi Niben101Scf06879g00001.1 302 QRQELQMKKAKLISMLDEVEQRYRQYHHQMQIIVASFEEAAGIGSAKSYTQLALHTISKQFRCLKDAITGQI 373 69*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.2E-55	223	371	IPR006563	POX domain
Pfam	PF07526	9.5E-47	230	370	IPR006563	POX domain
PROSITE profile	PS50071	12.05	419	482	IPR001356	Homeobox domain
SMART	SM00389	4.2E-10	422	486	IPR001356	Homeobox domain
CDD	cd00086	8.11E-12	422	483	No hit	No description
SuperFamily	SSF46689	5.56E-17	423	489	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-29	425	488	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	439	478	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MAMYYQGSSE IQADGLQTLY LMNPNYIGYT DTPHQQQQQQ QNLEQANMFF LNSGTAGNLP 60 HGQLPSQAHT QHLVGVPLQT SFQDPSRPSV HEVSTSHHGL LQRLWISNGR NSGGSGGNES 120 QSHIPSAVVS PNSGGGTTTD FASQLGFQRP GLVSPTQQHQ GLSLSLSPQQ QQQQQQMINF 180 RSFPLDHHEI SPHNNHQVGI LSSPSQRTNT NNDHIRGSGA SSSSFSNGMI VGSKYLKAAQ 240 QLLDEVVTVG KNIKEIGAKE KDRLLDNELM PLNSDVAASA PTSGSGGSGS QKNSVAELTT 300 VQRQELQMKK AKLISMLDEV EQRYRQYHHQ MQIIVASFEE AAGIGSAKSY TQLALHTISK 360 QFRCLKDAIT GQIKATSKSL GEEEINLGGK IEGSSSRLRF VDHHLRQQRA LQQLGMMQPN 420 AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKIMLAKQ TGLTRSQVSN WFINARVRLW 480 KPMVEEMYLE EVKNNQAQQN GLEENANKND KPNEEMSTKP SAPHETTNLR KDKQISSILQ 540 DASPTEISSS TISTSPTAGS LPAQAAGFSF IGSLNMENST SERNNKKPRN DMQNSSSSIL 600 SMETAMKAGD TRKGEKFNGD NRQARDRSYP LMTAYSTMGE FGRFNPEQQL AASFQGNGVS 660 LTLGLPPSEN LVLSGSQHNF LPNQNIGIEM GRIESHYNRM SNPQPSHPNI TYENIDFQSG 720 KRYAAQLLPD FVS

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MAMYYQGSSE IQADGLQTLY LMNPNYIGYT DTPHQQQQQQ QNLEQANMFF LNSGTAGNLP  60
HGQLPSQAHT QHLVGVPLQT SFQDPSRPSV HEVSTSHHGL LQRLWISNGR NSGGSGGNES  120
QSHIPSAVVS PNSGGGTTTD FASQLGFQRP GLVSPTQQHQ GLSLSLSPQQ QQQQQQMINF  180
RSFPLDHHEI SPHNNHQVGI LSSPSQRTNT NNDHIRGSGA SSSSFSNGMI VGSKYLKAAQ  240
QLLDEVVTVG KNIKEIGAKE KDRLLDNELM PLNSDVAASA PTSGSGGSGS QKNSVAELTT  300
VQRQELQMKK AKLISMLDEV EQRYRQYHHQ MQIIVASFEE AAGIGSAKSY TQLALHTISK  360
QFRCLKDAIT GQIKATSKSL GEEEINLGGK IEGSSSRLRF VDHHLRQQRA LQQLGMMQPN  420
AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKIMLAKQ TGLTRSQVSN WFINARVRLW  480
KPMVEEMYLE EVKNNQAQQN GLEENANKND KPNEEMSTKP SAPHETTNLR KDKQISSILQ  540
DASPTEISSS TISTSPTAGS LPAQAAGFSF IGSLNMENST SERNNKKPRN DMQNSSSSIL  600
SMETAMKAGD TRKGEKFNGD NRQARDRSYP LMTAYSTMGE FGRFNPEQQL AASFQGNGVS  660
LTLGLPPSEN LVLSGSQHNF LPNQNIGIEM GRIESHYNRM SNPQPSHPNI TYENIDFQSG  720
KRYAAQLLPD FVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	428	486	5	63	Homeobox protein Meis2
3k2a_B	6e-16	428	486	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778869.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009778870.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009778871.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_016478049.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_016478051.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_016478052.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
TrEMBL	A0A1S4AMV2	0.0	A0A1S4AMV2_TOBAC; BEL1-like homeodomain protein 1
TrEMBL	A0A1U7WNJ6	0.0	A0A1U7WNJ6_NICSY; BEL1-like homeodomain protein 1
STRING	XP_009778869.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-102	BEL1-like homeodomain 1