PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06850g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 26814.7 Da PI: 8.6333 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46 | 9.6e-15 | 80 | 129 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah +Er+RR+++ + ++ Lr++lP + ++K s ++ Le+Av+YI++L+ Niben101Scf06850g00011.1 80 AHRDIERQRRQEMANLYASLRSHLPLEF--LKGKRSASDHLEQAVNYIQHLE 129 8*************************65..9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.855 | 76 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-13 | 79 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.11E-9 | 80 | 132 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-11 | 80 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-12 | 80 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-5 | 82 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDPLSEIFSF HKIQDYDLYH QEIQIPSTPF QLPQQDLVKI GTNSLARNDT NKKKRLLSSV 60 STESTSNEIM DQNKLIKIIA HRDIERQRRQ EMANLYASLR SHLPLEFLKG KRSASDHLEQ 120 AVNYIQHLEN NITDLEKKRD KLKFLADYSS LEDKVRIHKY NLEEDVRVNP CQDGVEILIK 180 KKFGKEGLPL SKVVEELMKR KLNVVTCVST KVDETSLHKI QVEVYTHTMQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016437313.1 | 1e-142 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A1S3XC32 | 1e-140 | A0A1S3XC32_TOBAC; transcription factor bHLH118-like | ||||
STRING | XP_009597785.1 | 1e-137 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 3e-35 | bHLH family protein |