PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06825g04024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 186aa    MW: 21699.3 Da    PI: 10.839
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06825g04024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.1e-27959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien++ rqvtfskRr g+lKKA+ELS+LCdaev ++ifs++gk y ++s
  Niben101Scf06825g04024.1  9 KRIENQTSRQVTFSKRRSGLLKKAFELSILCDAEVVLLIFSPSGKAYQFAS 59
                              79**********************************************986 PP
2K-box49.42e-17871413387
                     K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                               +  Rh+ Ged+++L +keL+qLe+qL  ++++iRskK +++ e+i+ l+++ + +
  Niben101Scf06825g04024.1  87 EVRRHFAGEDISTLGMKELKQLERQLRIGVERIRSKKRRIISEHINWLKRRVRLH 141
                               557**********************************************998755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.805161IPR002100Transcription factor, MADS-box
CDDcd002651.19E-37278No hitNo description
SuperFamilySSF554556.41E-31279IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.44666167IPR002487Transcription factor, K-box
PfamPF014865.1E-1487139IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRGKVEMKR IENQTSRQVT FSKRRSGLLK KAFELSILCD AEVVLLIFSP SGKAYQFASH  60
DIDRTILRYK NEVGLSKTND QGFRATEVRR HFAGEDISTL GMKELKQLER QLRIGVERIR  120
SKKRRIISEH INWLKRRVRL HELREGEGSS TILDSDARMR IEELFLELQL HGRVKMKNAF  180
LCCLNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23179181MEF2C
5f28_B2e-23179181MEF2C
5f28_C2e-23179181MEF2C
5f28_D2e-23179181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267507.17e-97PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_019267508.17e-97PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_019267510.17e-97PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ93XH48e-40MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A314KYG32e-95A0A314KYG3_NICAT; Agamous-like mads-box protein agl19
STRINGPGSC0003DMT4000393131e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.23e-36MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]