PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06778g04005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 221aa MW: 25091.2 Da PI: 4.6077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.1 | 4.7e-06 | 147 | 168 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ff++ C++G++C+ +Hg Niben101Scf06778g04005.1 147 VMCKFFLQ-QRCRFGSSCRLSHG 168 68******.*********97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 143 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-5 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 148 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAEEEEERAV LERELELQLE EQREALHSLA QALSSDPSNP ELLEVHEELV QSIKDAEEGL 60 LHLKRARLLL EVDAIHCPKK EPADVEVEPL DPTEVKTEPL VDEEYSVGSK CRFRNTDGRW 120 YNGLVVGLEG SRSAKICFLN PTSENMVMCK FFLQQRCRFG SSCRLSHGIN IPISSLKKYI 180 PMKWDPSLAG SSIWALSDSK VGLWKEAELE SWDEKLNLGH X |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788527.1 | 1e-144 | PREDICTED: zinc finger CCCH domain-containing protein 18 | ||||
Swissprot | Q6K687 | 3e-89 | C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18 | ||||
TrEMBL | A0A1U7X8U4 | 1e-143 | A0A1U7X8U4_NICSY; zinc finger CCCH domain-containing protein 18 | ||||
STRING | XP_009788527.1 | 1e-144 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24830.1 | 1e-68 | C3H family protein |
Publications ? help Back to Top | |||
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