PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06736g04003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 342aa    MW: 38554 Da    PI: 6.7722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06736g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12205230126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Niben101Scf06736g04003.1 205 YQPDICKDYKETGYCGYGDSCKFMHD 230
                               67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-9203235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878204232IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7204231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12205235IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10205230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.7E-14265323IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.53E-13281324No hitNo description
PfamPF139201.0E-8281323No hitNo description
PROSITE profilePS5008910.571282320IPR001841Zinc finger, RING-type
CDDcd001621.02E-8282323No hitNo description
SMARTSM001841.7E-4282319IPR001841Zinc finger, RING-type
PROSITE patternPS005180297306IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MENSNTPAFE TNPAEDETEQ PPTAPPSSSS VCNFFKKPSK GKNIRKRPTV EEGENDDAEG  60
EGSVIYIKKK PAIADNKLRF STGASKCNKA TESNVDSKSR VFHFESSKEI QVQNDSRATA  120
TLETETEFSK DARAIRERAL KQAEEALKGK SKAGGDEKLY KGMNQYTDYK AGLRREHTIS  180
SEKAGGAHGP LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQI  240
EKEWDEAEKE RKRKLAMGML DEDDEDAEKS DEDDDDALPF ACFICREPFV DPVMTKCKHY  300
FCEHCALKHH AKNKKCFVCN QPTLGIFNTA FEIRKRMAAQ GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-693133714317RING finger protein 113A
5z58_M8e-693133714317RING finger protein 113A
6ff4_t8e-693133714317RING finger protein 113A
6ff7_t8e-693133714317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794839.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_016511945.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-158C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S4DEQ90.0A0A1S4DEQ9_TOBAC; zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A1U7Y6H20.0A0A1U7Y6H2_NICSY; zinc finger CCCH domain-containing protein 1
STRINGXP_009794839.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-157C3H family protein