PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06665g01018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 232aa MW: 24904.5 Da PI: 7.7337 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31 | 5.7e-10 | 104 | 129 | 1 | 26 |
XXXXCHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKka 26 e+elkr+rrkq+NRe+ArrsR+RK+ Niben101Scf06665g01018.1 104 ERELKRQRRKQSNRESARRSRLRKQV 129 89**********************96 PP | |||||||
2 | bZIP_1 | 27.7 | 6.1e-09 | 153 | 191 | 25 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +ae++eL++++++L +eN++L+ e+++++ e+++l +++ Niben101Scf06665g01018.1 153 QAECDELAQRAEVLREENSSLRAEVNRIRSEYEQLLAQN 191 89*********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 5.0E-18 | 7 | 71 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.9E-19 | 97 | 190 | No hit | No description |
SMART | SM00338 | 4.2E-15 | 104 | 193 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-7 | 104 | 130 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.69E-16 | 109 | 184 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 111 | 126 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.2E-7 | 153 | 191 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MMSATADTSQ NGNAAHGSQN GGTGGAPHSM VNQTMAIAPI SASAAGGIPG PTTNLNIGMD 60 YWGAATTPSI PAIHGNVPSA SVAGGLVAAG SRDSAQSHMW IQDERELKRQ RRKQSNRESA 120 RRSRLRKQVQ IILQFFPFSI IINPDSTSPF VSQAECDELA QRAEVLREEN SSLRAEVNRI 180 RSEYEQLLAQ NASLKERLGE VPGEDDPRTS RDDQLLGKKA QHSSQKESGQ GS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | RRSRLRK |
2 | 120 | 127 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625983.1 | 1e-131 | PREDICTED: bZIP transcription factor 16 | ||||
Swissprot | Q501B2 | 3e-59 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A1S4AGH5 | 1e-130 | A0A1S4AGH5_TOBAC; bZIP transcription factor 16-like | ||||
STRING | XP_009625983.1 | 1e-131 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3065 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 6e-47 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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