PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06662g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 330aa    MW: 36973.9 Da    PI: 8.5467
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06662g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-06181203123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C++C+k+F+++  L +H   H
  Niben101Scf06662g00003.1 181 YQCGICHKMFKTSQALGSHKTIH 203
                               9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.37E-5329No hitNo description
PfamPF139121.6E-4426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138431IPR007087Zinc finger, C2H2
SMARTSM003550.17426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-10179203No hitNo description
Gene3DG3DSA:3.30.160.606.9E-4179203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-4181204IPR007087Zinc finger, C2H2
SMARTSM003550.03181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-10235262No hitNo description
PfamPF139123.2E-11240263IPR007087Zinc finger, C2H2
SMARTSM003550.063240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18240262IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEKHKCKLCS RKFLNGKALG GHMRYHLMAL PLPPKTPPLK QDSAGGRSHS TLSLCSSENQ  60
EEEVLEQKGD DSLGNYGLRE NPKRSFRMID PEFLDGGYVV QDRESETEST KTPTCRRSKR  120
SKKMVVTVEK EEEKSVDFEP LSLFSDSSSE EDIAMCLMML SKDVWKSSKP SKLRSKHGKK  180
YQCGICHKMF KTSQALGSHK TIHKIKNNNY NSSSTSIEES EQKPTKKLVS VKNIMDKKLH  240
ECPFCGKLFQ SGQALGGHKR SHLIMSSSTT CSSSLKLGDS FLVEYSNSAK VPNGFIDLNM  300
PAPMEDEDFS QPDFSAISDA DFQHQENGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489068.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S4BJI00.0A0A1S4BJI0_TOBAC; zinc finger protein ZAT1-like
STRINGXP_009591197.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-32C2H2-like zinc finger protein