PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06570g00008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 386aa MW: 42468.6 Da PI: 7.3694

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06570g00008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	55	115	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + Niben101Scf06570g00008.1 55 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 115 56789*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-33	58	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	59	113	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MLGDCEKMVL IPSSTTNEWP QQNIQSDEKT LMMSSNGSSN MEKPIQDPQQ QQQQQQPPLK 60 CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRIKRPSAA 120 SSSTHDITIT SSSSLNNNIS ATNPSHHHNH IHGSPNIDLS STTSSNHLNP LFYGLNTERS 180 DLNNNPFSRL FSSRVSSATD EGQVYSLTTD SIPGLDRRLG LGFSSSGLVD ENNYVHGFNS 240 IKQIQDVMTN SNTTNSSSLL SSYPMFGSST ASSSTSTMAS LIASSLQQQK FMSNGNNFHG 300 LAPYEELQMS GNNNNNNNVE GGNGMPMLKE EKEEGGGNRL NWNNLSNHQN HQIHEQIMNS 360 SDPSLSWNGA WLDPSNMGSN SVPSLI

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MLGDCEKMVL IPSSTTNEWP QQNIQSDEKT LMMSSNGSSN MEKPIQDPQQ QQQQQQPPLK  60
CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRIKRPSAA  120
SSSTHDITIT SSSSLNNNIS ATNPSHHHNH IHGSPNIDLS STTSSNHLNP LFYGLNTERS  180
DLNNNPFSRL FSSRVSSATD EGQVYSLTTD SIPGLDRRLG LGFSSSGLVD ENNYVHGFNS  240
IKQIQDVMTN SNTTNSSSLL SSYPMFGSST ASSSTSTMAS LIASSLQQQK FMSNGNNFHG  300
LAPYEELQMS GNNNNNNNVE GGNGMPMLKE EKEEGGGNRL NWNNLSNHQN HQIHEQIMNS  360
SDPSLSWNGA WLDPSNMGSN SVPSLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016441727.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1S3XPZ3	0.0	A0A1S3XPZ3_TOBAC; dof zinc finger protein DOF1.4-like
STRING	XP_009623141.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-36	Dof family protein