PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf06514g02019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 360aa MW: 40490.9 Da PI: 7.3934 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.6 | 1.7e-06 | 215 | 255 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+++ ++ L +llP++ kK++ a++L +A +Y+k Lq Niben101Scf06514g02019.1 215 RIRRQKLSEKTRSLEKLLPWD-----KKMDTATMLGEAYKYVKFLQ 255 89******************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.017 | 205 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-10 | 210 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-5 | 211 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.92E-6 | 215 | 259 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 215 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MERKPLLQPE FNAGEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEEVKPLSLS 60 YFHPSLANDI PYAAAASQMQ QCSATFDFSS TRDFPWVKET ENILDADQKL TLPKLEPVTE 120 NLQFYPYNKK IFLNEPPFNY FSNGISDDSG LGYGRLPDLR CLEMPNYLDF HLGDSSSTVN 180 GVEPVSVNSQ LLMSNQLSTM PKSCKRSAYG SSTTRIRRQK LSEKTRSLEK LLPWDKKMDT 240 ATMLGEAYKY VKFLQAQVRV LQSMPVLVEG GASSSFSGSE DRNGKSIYVN EVKANSFYGP 300 LARLNRQQLL QVVLNSPVAQ TYLYSKGCCV YSAEQLLQLR KIAQSNALYR QTLFYSGMFS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790451.1 | 0.0 | PREDICTED: transcription factor bHLH117 | ||||
TrEMBL | A0A1U7XLG3 | 0.0 | A0A1U7XLG3_NICSY; transcription factor bHLH117 | ||||
STRING | XP_009790451.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11250 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22100.1 | 1e-17 | bHLH family protein |