PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06392g02008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 639aa MW: 73033.8 Da PI: 7.8613

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06392g02008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.1	1e-21	59	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn YAk++GF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eH Niben101Scf06392g02008.1 59 EFYNLYAKKLGFRIRIGQLYRSRVDGSVISRRFVCSKEGFQTT--------------SRTGCPAFIRVQKADSGKWVLANVKKEH 129 6*************************************976..............589********************* PP FAR1 86 nHela 90 nHel Niben101Scf06392g02008.1 130 NHELE 134 *96 PP
2	FAR1	68.7	1.4e-21	214	288	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn+YA + GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w v+++++eH Niben101Scf06392g02008.1 214 EFYNAYAANSGFKVRVGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQDTGRWLVDRFQNEH 284 6************************************9998..............4899******************** PP FAR1 86 nHel 89 nHel Niben101Scf06392g02008.1 285 NHEL 288 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-18	59	134	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.5E-17	214	288	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.423	482	518	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.5E-6	489	515	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-7	493	520	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MSREELDNSM TVRAKPAALA IVNNNNCYHR DNEEEEEEGE SKLEPNVGLE FDSAEEAQEF 60 YNLYAKKLGF RIRIGQLYRS RVDGSVISRR FVCSKEGFQT TSRTGCPAFI RVQKADSGKW 120 VLANVKKEHN HELETSGEIC PSRVQRKNIP NPKSSVVVVS TRTGLRSIDE DGPGPSGIID 180 LKRFKREKID VELQPRGSEP YKGLEFTSAG EAYEFYNAYA ANSGFKVRVG QLFRSKNDGS 240 ITSRRFVCSK EGHQHPSRVG CGAFMRIQRQ DTGRWLVDRF QNEHNHELGL PADASGRVKG 300 FKEEASSVLE NMDLVELNGG LSLSQTANEF EAAWNVLVNK YNLRKNTWLM EMYRMRKSWV 360 PLHIRGTFFA GIPMDGSLKS YFGTILTSQT PLSEFLIRYE KALEQRREEE RKEDFNSFNL 420 QAVLHTKDPI EDQCRRLYTI TMFQVFQKEL LECYSFVGIK INVEGAISRY LVQKSASGDE 480 RNTVAFNASN LNVSCSCKMF EFEGMLCRHA LKIFQIMNIR ELPSHYILHR WTKDAKYGIL 540 RDVDSGGASQ DHKALMLWSL REEAKNYIEA GTASLERYKL AFEIMQEENA DFLFGRKQGS 600 FPVVMVKFGL ENAKEDKGLP TKVVCFGLSD WWWQDTGLV

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MSREELDNSM TVRAKPAALA IVNNNNCYHR DNEEEEEEGE SKLEPNVGLE FDSAEEAQEF  60
YNLYAKKLGF RIRIGQLYRS RVDGSVISRR FVCSKEGFQT TSRTGCPAFI RVQKADSGKW  120
VLANVKKEHN HELETSGEIC PSRVQRKNIP NPKSSVVVVS TRTGLRSIDE DGPGPSGIID  180
LKRFKREKID VELQPRGSEP YKGLEFTSAG EAYEFYNAYA ANSGFKVRVG QLFRSKNDGS  240
ITSRRFVCSK EGHQHPSRVG CGAFMRIQRQ DTGRWLVDRF QNEHNHELGL PADASGRVKG  300
FKEEASSVLE NMDLVELNGG LSLSQTANEF EAAWNVLVNK YNLRKNTWLM EMYRMRKSWV  360
PLHIRGTFFA GIPMDGSLKS YFGTILTSQT PLSEFLIRYE KALEQRREEE RKEDFNSFNL  420
QAVLHTKDPI EDQCRRLYTI TMFQVFQKEL LECYSFVGIK INVEGAISRY LVQKSASGDE  480
RNTVAFNASN LNVSCSCKMF EFEGMLCRHA LKIFQIMNIR ELPSHYILHR WTKDAKYGIL  540
RDVDSGGASQ DHKALMLWSL REEAKNYIEA GTASLERYKL AFEIMQEENA DFLFGRKQGS  600
FPVVMVKFGL ENAKEDKGLP TKVVCFGLSD WWWQDTGLV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264527.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	1e-105	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2H5N7E0	0.0	A0A2H5N7E0_CITUN; Uncharacterized protein (Fragment)
STRING	XP_009791235.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-107	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]