PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06376g01011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 330aa    MW: 36573.4 Da    PI: 6.0743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06376g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.4e-10243286755
                               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Niben101Scf06376g01011.1 243 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 286
                               5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.19E-13236296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.167236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-12237293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-11238290No hitNo description
SMARTSM003539.6E-12242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7244286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSMALAKEHI MNDTKMGLVD NYEYYEGEFG MNDHSSPELY HGINEEPPKS EFEESENPEK  60
TSPNIAKNFA ISSSSSLSSP SSSNSNGHSV ISFKGGYGGN FMHSANGSLL SFEQSERFCP  120
YPRISSNKVE CSVWEDNNLQ YNNINNYQNS LSSKGSSNTS PRVLINENSK NIQRADSYGN  180
SNGIPFGWLN SEANATVEDL EESRFNKRPC MEESMQTNKK QCSGGSKKGK SNNSVATKDP  240
QSIAAKNRRE RISERLKILQ ELVPNGSKVD LVTMLEKAIS YVKFLQVQVK VLATDEFWPT  300
QGGKAPDISQ VKDAIDAILA TQRDRNSSSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252959.10.0PREDICTED: transcription factor bHLH83-like
SwissprotQ9C7071e-58BH083_ARATH; Transcription factor bHLH83
TrEMBLA0A1J6INI00.0A0A1J6INI0_NICAT; Transcription factor bhlh83
STRINGXP_009599823.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-54ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Lin CY, et al.
    Pathways involved in vanadate-induced root hair formation in Arabidopsis.
    Physiol Plant, 2015. 153(1): p. 137-48
    [PMID:24833217]
  4. Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
    Root hairs.
    Arabidopsis Book, 2014. 12: p. e0172
    [PMID:24982600]
  5. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  6. Moro CF, et al.
    S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
    New Phytol., 2017. 213(4): p. 1771-1786
    [PMID:27880005]
  7. Bahmani R,Kim DG,Kim JA,Hwang S
    The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 1763
    [PMID:27933081]
  8. Liao X,Lovett B,Fang W,St Leger RJ
    Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
    Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
    [PMID:28708056]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]