PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06376g01011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 330aa MW: 36573.4 Da PI: 6.0743 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.3 | 7.4e-10 | 243 | 286 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Niben101Scf06376g01011.1 243 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 286 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.19E-13 | 236 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.167 | 236 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-12 | 237 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.80E-11 | 238 | 290 | No hit | No description |
SMART | SM00353 | 9.6E-12 | 242 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-7 | 244 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MSMALAKEHI MNDTKMGLVD NYEYYEGEFG MNDHSSPELY HGINEEPPKS EFEESENPEK 60 TSPNIAKNFA ISSSSSLSSP SSSNSNGHSV ISFKGGYGGN FMHSANGSLL SFEQSERFCP 120 YPRISSNKVE CSVWEDNNLQ YNNINNYQNS LSSKGSSNTS PRVLINENSK NIQRADSYGN 180 SNGIPFGWLN SEANATVEDL EESRFNKRPC MEESMQTNKK QCSGGSKKGK SNNSVATKDP 240 QSIAAKNRRE RISERLKILQ ELVPNGSKVD LVTMLEKAIS YVKFLQVQVK VLATDEFWPT 300 QGGKAPDISQ VKDAIDAILA TQRDRNSSSK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019252959.1 | 0.0 | PREDICTED: transcription factor bHLH83-like | ||||
Swissprot | Q9C707 | 1e-58 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A1J6INI0 | 0.0 | A0A1J6INI0_NICAT; Transcription factor bhlh83 | ||||
STRING | XP_009599823.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9986 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-54 | ROOT HAIR DEFECTIVE6 |