PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06267g03011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 309aa MW: 34997.6 Da PI: 7.068

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06267g03011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5e-20	51	112	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r p+ae+++++++kl +++ ++V++WFqN++a+e++ Niben101Scf06267g03011.1 51 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 112 58***************8678***********************************97 PP
2	Wus_type_Homeobox	114.1	6.9e-37	50	114	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Niben101Scf06267g03011.1 50 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 114 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-7	35	112	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-12	36	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.527	47	113	IPR001356	Homeobox domain
SMART	SM00389	4.9E-6	49	117	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-17	52	112	IPR001356	Homeobox domain
CDD	cd00086	4.05E-7	52	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MEAAQQQNQQ HYLHQQHLSI GQVTNNIIED GVGGNSSKNN NSSSFMCRQS STRWTPTTDQ 60 IRILKDLYYN NGVRSPTAEQ IQRISAKLRQ YGKIEGKNVF YWFQNHKARE RQKKRLIAAA 120 ATDNIPMHMR GVWRSADDPI HHKYNNTTGI HCPSASSHGV LAVGQNGNYG YGTLAMEKSF 180 RDCSISPCGN SNGSMGHQNI TWVGVDPYTS HQAYPFLEKT KHFDETIVDD YEELQQEEEN 240 YQRASALETL PLFPMHEENM SSFCNIKHES SGGFYTEWYR SDDHNLAAAA RASLELSLNS 300 FIGRSPNSP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792214.1	0.0	PREDICTED: protein WUSCHEL
Refseq	XP_016474994.1	0.0	PREDICTED: protein WUSCHEL-like
Swissprot	Q8LL11	1e-154	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A1S4AEE8	0.0	A0A1S4AEE8_TOBAC; WUS
TrEMBL	A0A1U7XZ16	0.0	A0A1U7XZ16_NICSY; protein WUSCHEL
STRING	XP_009792214.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7604	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	6e-42	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]