PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06245g01015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 570aa MW: 64633.3 Da PI: 4.406

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06245g01015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.1	4.1e-54	10	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 l+pGfrFhPtdeelv +yL++k++g++++ i+++diykvePwdLp k ++k+++ ewyfFs dkky +g r+nrat++gyW Niben101Scf06245g01015.1 10 LAPGFRFHPTDEELVRYYLRRKITGRPIKS-APISDIDIYKVEPWDLPgKsRLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYW 93 579**********************999.78***********6347777888*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+tgkd++v ++k+++vg+kktLv+++grapkg++t+Wvmheyrl Niben101Scf06245g01015.1 94 KTTGKDRAVRRTKSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 138 *****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-61	9	161	IPR003441	NAC domain
PROSITE profile	PS51005	58.937	10	161	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MESRGSLKSL APGFRFHPTD EELVRYYLRR KITGRPIKSA PISDIDIYKV EPWDLPGKSR 60 LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR AVRRTKSQVV GMKKTLVYHS 120 GRAPKGQRTN WVMHEYRLID EELDREGIPQ DAFVVCRVFQ KSGAGPKNGE QYGAPFIEEE 180 WEDDDLQVLP KDEAAEEFVF DDDIYLDGIE LDQVIISDIS VAVPFILCMC SNIFEISDHV 240 NMILGTETTL NSAPLPLNYC YGENVSSEET NNSSDAQNWL QQPDELKPID LAVQQNVDVV 300 PVMPEYIGES IKNVNSEDLD YLLNEPTVNT TDDFQFKEEA FLEANDFSNP IEVDSSGFDM 360 LEEYLTFFDA NNDFQNMGFD PSVLFGNDDQ ISDQALLAEK NIGEVTQQFI APNEWLGENK 420 NDFASSSKLE PTKFGSDRQY PFMKKASQML GNIHAPPAFA SEFPTKDATL RLNSWSRSSS 480 SVQVTGGFQI RDVTAGSNET RWPLGKHADY SIILSFGISQ RSDDSAMESF YSIHPGKTTS 540 IISRGWFYYL FFSFLMLCMS FKIGTIICAS

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MESRGSLKSL APGFRFHPTD EELVRYYLRR KITGRPIKSA PISDIDIYKV EPWDLPGKSR  60
LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR AVRRTKSQVV GMKKTLVYHS  120
GRAPKGQRTN WVMHEYRLID EELDREGIPQ DAFVVCRVFQ KSGAGPKNGE QYGAPFIEEE  180
WEDDDLQVLP KDEAAEEFVF DDDIYLDGIE LDQVIISDIS VAVPFILCMC SNIFEISDHV  240
NMILGTETTL NSAPLPLNYC YGENVSSEET NNSSDAQNWL QQPDELKPID LAVQQNVDVV  300
PVMPEYIGES IKNVNSEDLD YLLNEPTVNT TDDFQFKEEA FLEANDFSNP IEVDSSGFDM  360
LEEYLTFFDA NNDFQNMGFD PSVLFGNDDQ ISDQALLAEK NIGEVTQQFI APNEWLGENK  420
NDFASSSKLE PTKFGSDRQY PFMKKASQML GNIHAPPAFA SEFPTKDATL RLNSWSRSSS  480
SVQVTGGFQI RDVTAGSNET RWPLGKHADY SIILSFGISQ RSDDSAMESF YSIHPGKTTS  540
IISRGWFYYL FFSFLMLCMS FKIGTIICAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-45	9	167	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-45	9	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-45	9	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-45	9	167	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-45	9	167	19	174	NAC domain-containing protein 19
3swm_B	7e-45	9	167	19	174	NAC domain-containing protein 19
3swm_C	7e-45	9	167	19	174	NAC domain-containing protein 19
3swm_D	7e-45	9	167	19	174	NAC domain-containing protein 19
3swp_A	7e-45	9	167	19	174	NAC domain-containing protein 19
3swp_B	7e-45	9	167	19	174	NAC domain-containing protein 19
3swp_C	7e-45	9	167	19	174	NAC domain-containing protein 19
3swp_D	7e-45	9	167	19	174	NAC domain-containing protein 19
4dul_A	7e-45	9	167	16	171	NAC domain-containing protein 19
4dul_B	7e-45	9	167	16	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599412.1	0.0	PREDICTED: NAC domain-containing protein 53-like isoform X1
TrEMBL	A0A1J6KMA5	0.0	A0A1J6KMA5_NICAT; Nac domain-containing protein 78
STRING	XP_009599412.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3141	24	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-127	NAC domain containing protein 2