PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06203g05020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 457aa    MW: 51646.4 Da    PI: 6.2848
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06203g05020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19119168255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Niben101Scf06203g05020.1 119 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFSTAEDAARAYDRAAIEFRG 168
                               59*******.**********82....48************************998 PP
2AP2612.7e-19317366255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Niben101Scf06203g05020.1 317 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFKTAEDAARAYDKAAIEFRG 366
                               59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.34E-22118175No hitNo description
PROSITE profilePS5103224.5119176IPR001471AP2/ERF domain
SMARTSM003801.8E-38119182IPR001471AP2/ERF domain
PfamPF008472.6E-13119168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-31119175IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22119177IPR016177DNA-binding domain
PRINTSPR003671.8E-11120131IPR001471AP2/ERF domain
PRINTSPR003671.8E-11142158IPR001471AP2/ERF domain
CDDcd000181.15E-32316373No hitNo description
SMARTSM003804.4E-37317380IPR001471AP2/ERF domain
PfamPF008471.0E-12317366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-31317374IPR001471AP2/ERF domain
PROSITE profilePS5103224.698317374IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-21317374IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MQWSTKRAKQ EETSVNHLIS KPKFSDEQEF SIMVSALTNV ITGNTTQEFQ YAMTTNSATV  60
VSSSSPSTSM SNIEPPLFHV PTEPEPCQFC KIIGCLGCNY FGAPENNKPN IVAKKKKKNY  120
RGVRQRPWGK WAAEIRDPRR AARVWLGTFS TAEDAARAYD RAAIEFRGPR AKLNFLFSDY  180
TSIQQQNATT STTFSTSQQQ QEPVHELQQG NKTDFGIGKE EEFWDRLMAS DNEIQDCLRM  240
MDFNGESNNK AKQEETVSVN HLISKPKFTD EQEFSIMVAA LKNVITGDTT QEFQYIISSS  300
SPSTSMSSLE PPLFRKNYRG VRQRPWGKWA AEIRDPRRAA RVWLGTFKTA EDAARAYDKA  360
AIEFRGSRAK LNFSFADYTS IQQQNATTST TFSTSQQQQE PVHELQQGNK TDFGIGNEEE  420
FWDQLMASDN EIQDCLRMMD FNGESSYSGG GSIAHGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23118373159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118AKKKKKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762423.11e-134PREDICTED: ethylene-responsive transcription factor ERF109-like
RefseqXP_016439810.11e-134PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1S3XIL41e-132A0A1S3XIL4_TOBAC; ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1U7V7Q01e-132A0A1U7V7Q0_NICSY; ethylene-responsive transcription factor ERF109-like
STRINGXP_009762423.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-30redox responsive transcription factor 1