PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06200g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 25676.3 Da PI: 6.2375 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 30 | 78 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr +k +gr++AeIrdp r +r++lg+f+ ae+Aa a++aa+++++ Niben101Scf06200g00001.1 30 HYTGVR-KKLWGRYEAEIRDPL----RnTRVWLGTFDNAEDAAIAYDAAARRFR 78 599**9.677**********73....34***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.626 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-18 | 30 | 88 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-29 | 30 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.19E-14 | 30 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-27 | 30 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-9 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAQNVMGDAA VTVAVPAAEN MNGGVSEEIH YTGVRKKLWG RYEAEIRDPL RNTRVWLGTF 60 DNAEDAAIAY DAAARRFRRT KAKTNFPSTT VTKDWSLAPL NLNHGGESSV GSAGSFTYLK 120 QNNLNPGGGS SVGSAASFTY LKQNHQFRHF PAAGGSAPPS ARDYQYLEAL TGAEVSHHDP 180 SSQRGTIAFL GGGDSVSGCG IQTESESSSV LNYNFNDVNQ PTMTANCLNL DLNLPPPDNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 30 | 87 | 5 | 63 | ATERF1 |
3gcc_A | 3e-18 | 30 | 87 | 5 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591053.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
Refseq | XP_016506469.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
TrEMBL | R4WAR7 | 1e-135 | R4WAR7_TOBAC; Ethylene response factor #206 | ||||
STRING | XP_009591053.1 | 1e-136 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15195 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 9e-14 | ethylene response factor 8 |