PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05988g07003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 823aa    MW: 91523.8 Da    PI: 4.856
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05988g07003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2098153156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Niben101Scf05988g07003.1  98 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 153
                               688899***********************************************998 PP
2START144.79e-462985162206
                               HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                     START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWde 74 
                               la++  +elvk+ +a++p+W +      e++n +e+ ++f+   v         ++ea r s+vv+m++     +l + +e +  
  Niben101Scf05988g07003.1 298 LALSSKDELVKMCQAADPLWIQTTdsgkEILNVEEYSRTFPWP-VgikqnsneLRIEATRSSAVVIMNSI----TLNKWMELFPS 377
                               788899*****************99999999999999999754.24788889999999999999999999....55555556777 PP

                               T-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
                     START  75 tlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSg 151
                                + +a+t++v++sg      g lqlm++e+qal+plvp R+ +f+Ry++q  ++g+w+ivd  +ds q++   +++   +++pSg
  Niben101Scf05988g07003.1 378 IISRAKTIQVVTSGvsghasGSLQLMFMEMQALTPLVPtRECYFLRYCQQnVEEGTWAIVDFPLDSVQNNF-PAPFPYFKRRPSG 461
                               777***********************************************99******************9.68888888***** PP

                               EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               ++i++++ng+s+vtwve+++++++ + ++++  v+sg+a+ga++w+  lqrqce+
  Niben101Scf05988g07003.1 462 CIIQDMPNGYSRVTWVEQAEVEENPVNQIFNKYVSSGMAFGAQRWLGILQRQCER 516
                               *****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-2179153IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1984156IPR009057Homeodomain-like
PROSITE profilePS5007116.74695155IPR001356Homeobox domain
SMARTSM003895.8E-1996159IPR001356Homeobox domain
CDDcd000868.22E-1898156No hitNo description
PfamPF000461.1E-1798153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084837.027288519IPR002913START domain
SuperFamilySSF559611.36E-27289518No hitNo description
CDDcd088757.15E-108292515No hitNo description
SMARTSM002341.4E-28297516IPR002913START domain
PfamPF018527.7E-38298516IPR002913START domain
SuperFamilySSF559612.2E-17545712No hitNo description
SuperFamilySSF559612.2E-17745785No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MFGDCQLFSS MGMGGNAVSS DSLYSSPIQD PNFNFMAMGG SNLPFNIFPP NIIPKEEHGL  60
LKSKEEMDSG SGSEHIEGMS GNELETEQQQ QQQQPGKKKR YHRHTARQIQ EMEALFKECP  120
HPDDKQRLKL SQDLGLKPRQ VKFWFQNRRT QMKAQQDRAD NVILRAENDN LKNENYRLQA  180
ALRSIMCPSC GGPAMLGEMG YDEQQLRLEN ARLKEEFERV CCLLSQYNGR GPMQGIGPTP  240
PLLPPSLELD MSINFSRKFE EENSSTDMVP VPFMPENNSH FAGGPIIMEE EKSIAMELAL  300
SSKDELVKMC QAADPLWIQT TDSGKEILNV EEYSRTFPWP VGIKQNSNEL RIEATRSSAV  360
VIMNSITLNK WMELFPSIIS RAKTIQVVTS GVSGHASGSL QLMFMEMQAL TPLVPTRECY  420
FLRYCQQNVE EGTWAIVDFP LDSVQNNFPA PFPYFKRRPS GCIIQDMPNG YSRVTWVEQA  480
EVEENPVNQI FNKYVSSGMA FGAQRWLGIL QRQCERLASL MARNISDLGV IPSPEARKSL  540
MNLTQRMIKT FCMNISTSCG QSWTALSDSL QDTVRITTRK VTEPGQPNGL ILCAVSTTWI  600
PYNHFQVFDL LRDERRRAQL DVLSNANSLH EVAHIANGSH PGNCISLLRI NVASNSSQSV  660
ELMLQESCTD DSGSLVVYTT VDVDAIQLAM NGEDPSCIPL LPLGFVVTPV GQINNCDTNI  720
NPSEANSGAQ SSEKSNLSIE ESESGGCLLT VGLQVLASTI PTAKLNLSSV TAINHHVCNT  780
VQQITDALSA FYPEPAITVP LPQLQPQQQQ LEPKQADEIS SNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786380.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_009786381.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_009786382.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A1U7XIT30.0A0A1U7XIT3_NICSY; homeobox-leucine zipper protein HDG5 isoform X1
STRINGXP_009786380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7