PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05948g03017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 408aa    MW: 46432.6 Da    PI: 5.0929
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05948g03017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124e-35141062102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX. CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks. 85 
                               Fl+k+ye+++d++ + ++sws++++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++  
  Niben101Scf05948g03017.1  14 FLTKTYEMVDDPSSDAIVSWSSSNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDn 89 
                               9****************************************************************999.........*****988 PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                               F +g+ +ll++i+r+k 
  Niben101Scf05948g03017.1  90 FVRGQPHLLKNIHRRKP 106
                               **************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-6210104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.75E-3510104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-3811104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3114104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDEATCSTNA LPPFLTKTYE MVDDPSSDAI VSWSSSNKSF IVWNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDNF VRGQPHLLKN IHRRKPVHSH SAQNLHGLPS  120
PLTESERQGY KEDIQKLKHE NESLHLDLQR HQRDRQGLEL QMQVFTERVQ HVEHRQNTML  180
SALSRMLDKP VTDLSRMPQL QVNDRKRRLP GNSCLYNETD LEDTRAISSR ALTWENMNPS  240
SLLTINAELL DQLDSSLIFW ENLLQDVDQA RIQQNCSLEL DESTSCADSP AISYTQLNVD  300
VGPKAFDIDM NSEPNANTNP EVAAPQDQAA VAGTTTNVPT GVNDVFWEQF LTENPGSVDA  360
SEVQSERKGI GNKKNESKPV DSGKFWWNMK SVNSLAEQLG HLTPAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241110426129Heat shock factor protein 1
5d5v_B2e-241110426129Heat shock factor protein 1
5d5v_D2e-241110426129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264685.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotO494031e-113HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1S4DMM30.0A0A1S4DMM3_TOBAC; heat stress transcription factor A-4c-like isoform X1
TrEMBLA0A314L5060.0A0A314L506_NICAT; Heat stress transcription factor a-4a
STRINGXP_009592186.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-115heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]