PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05855g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 295aa    MW: 33100.4 Da    PI: 6.778
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05855g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18127181256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ +++keq  +Lee F+++++++ +++  L+k+l+L  rqV vWFqNrRa+ k
  Niben101Scf05855g03003.1 127 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTK 181
                               788899***********************************************98 PP
2HD-ZIP_I/II125.72.1e-40127216191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rlskeq+++LEe+F+e+++L+p++K +l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+
  Niben101Scf05855g03003.1 127 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVT 211
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eLr +l
  Niben101Scf05855g03003.1 212 ELR-AL 216
                               **9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
PfamPF046183.2E-164103IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466894.71E-18120184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-17123186IPR009057Homeodomain-like
PROSITE profilePS5007116.925123183IPR001356Homeobox domain
SMARTSM003896.6E-15125187IPR001356Homeobox domain
PfamPF000469.8E-16127181IPR001356Homeobox domain
CDDcd000863.65E-15127184No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
SMARTSM003402.1E-25183226IPR003106Leucine zipper, homeobox-associated
PfamPF021838.5E-11183217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGGDKEDGLG LSLSLGMGCP KNNLKNNFTS SSTPPFLLPF MHNHQISAER NEEARESIRG  60
EIDMNRPVRM IESCDEELED EAVIMVSSPN NSTVSSVSGK RSHDIEDNEG ERPTSSLEDD  120
GGDAAARKKL RLSKEQAAVL EETFKEHNTL NPKQKLALSK QLNLRPRQVE VWFQNRRART  180
KLKQTEVDCE YLRRCCENLT EENRRLQKEV TELRALKLSP QMYMNMTPPT TLTMCPQCER  240
VVVSSSSAAS SSVTGAGVSR WNHPVDALHQ PPVPLNKPWA AIFSPKTLDV QRTQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230129.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP929531e-81ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLA0A314KK980.0A0A314KK98_NICAT; Homeobox-leucine zipper protein hat3
STRINGXP_009619639.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11182485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-76homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]