PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05811g07001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 700aa    MW: 77704.4 Da    PI: 9.276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05811g07001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07601650147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Niben101Scf05811g07001.1 601 RRPFSVYEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 650
                               567888899*****************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.583596655IPR017930Myb domain
SMARTSM007172.0E-6600653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-10601651IPR009057Homeodomain-like
CDDcd116602.44E-16602652No hitNo description
SuperFamilySSF466891.97E-15602683IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MVLHKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGNE ICAFDLLTTV AGKLLXRGRG  60
NIRKKSDGNE MCAFDLLTTV AGKLLLEGES TPNSTNTVKE DEDTSLKENL YNEGIRERGF  120
FISPIVSEAP VVNHCLSKSK DTLSGQASVI TSSDCSEKLD SAERFINCES KNENGNCSTK  180
VEQEASGFGH FSNCTLAAES KKQMKIDLSN DAKIFGSEFP DLWDRKPTNL VASDNTVKLS  240
LSTDPVPFGS FPVIRNDVKL TNKDDDENYC GCAQPSTRNK AFRPTPRVGN FRMRKLSDVN  300
PKFEDADSET RHLYQNRKND YKTERSQRDF PFKKRKLYYC NSFSDSDGGS SDRICSSPTN  360
DLNRDAAGCS LASSGARAAV GTSISRSART SSDPHVKLKI KSFRVPELFV EIPENATIPT  420
QKFSVYAFNI LPQRTVMEAV TAILGGGLHI GVVFQGKKVR DDNKTLLQAG ISHDDKLDAL  480
GFTLEPKPSR ASLTLGPESH SRVLPCDIPQ PLTRGPPTST VICNGIRQGT YNAFSDHPEP  540
NLNNFIESDH DSAPSPPDAS LEKDAAELRA LVPAAAVNAE ALAVVPMRKP KRSETAQRRI  600
RRPFSVYEVE ALVQAVEKLG TGRWRDVKMR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ  660
RRGEPVPQEL LDRVLIAHGY WSQKQAKLHM KHQSETRLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-545886914107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326335QRDFPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232923.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A1J6JID70.0A0A1J6JID7_NICAT; Telomere repeat-binding protein 5
STRINGXP_009792985.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-131TRF-like 2