PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05713g04012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 17026.3 Da PI: 9.47 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.4 | 9.1e-07 | 15 | 42 | 5 | 34 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 5 hnerErrRRdriNsafeeLrellPkaskap 34 + +E++RR++++ ++eL +l+P+ + Niben101Scf05713g04012.1 15 RKSIEKNRRNQMKALYSELYSLVPHHH--H 42 5789*********************62..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-5 | 12 | 42 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.18E-5 | 14 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MEQCNSPSAL SKADRKSIEK NRRNQMKALY SELYSLVPHH HHSRINLERM RQRKERLTVD 60 GNPSSIRSSS ERKETQPLLP HLEIYHVDSS LDVVLITRID YQFIFNDIIR MLHEESLEVG 120 ECATGYRATR ISDRLKKIVG SGHSGAGN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792759.1 | 7e-76 | PREDICTED: uncharacterized protein LOC104239707 | ||||
Refseq | XP_016469681.1 | 7e-76 | PREDICTED: uncharacterized protein LOC107792022 | ||||
TrEMBL | A0A1S3ZZE1 | 2e-74 | A0A1S3ZZE1_TOBAC; uncharacterized protein LOC107792022 | ||||
TrEMBL | A0A1U7Y0J4 | 2e-74 | A0A1U7Y0J4_NICSY; uncharacterized protein LOC104239707 | ||||
STRING | XP_009792759.1 | 3e-75 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5105 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 4e-17 | bHLH family protein |