PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05713g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 180aa    MW: 20353.3 Da    PI: 8.4751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05713g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-121766555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                       HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                               + +E++RR++++  + +L +l+P++  + s+  ls  + Le+A+ YIk Lq
  Niben101Scf05713g03006.1 17 RKTIEKNRRNQMKALYLKLHSLVPHP--QLSREvLSLPDQLEEAISYIKRLQ 66
                              6789*********************7..477778*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-61070No hitNo description
PROSITE profilePS5088811.491265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-111482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-101482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-81866IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEQQCNNPSS SSSKADRKTI EKNRRNQMKA LYLKLHSLVP HPQLSREVLS LPDQLEEAIS  60
YIKRLQIDLE RMTQKKDSLK SGENTSCGRK TGLPLPQIEI HTMDSALQVV LTTGLDYQFI  120
FTDVIRLLHE ESVQVINASY TIIGDTIVHS IHSKMGERSP DDQYGAARIS ERLKKFVGGC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503356.11e-116PREDICTED: transcription factor bHLH55-like
TrEMBLA0A1S4CQM51e-114A0A1S4CQM5_TOBAC; transcription factor bHLH55-like
STRINGXP_009792659.11e-115(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-36bHLH family protein